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      Ediacaran biozones identified with network analysis provide evidence for pulsed extinctions of early complex life

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          Abstract

          Rocks of Ediacaran age (~635–541 Ma) contain the oldest fossils of large, complex organisms and their behaviors. These fossils document developmental and ecological innovations, and suggest that extinctions helped to shape the trajectory of early animal evolution. Conventional methods divide Ediacaran macrofossil localities into taxonomically distinct clusters, which may represent evolutionary, environmental, or preservational variation. Here, we investigate these possibilities with network analysis of body and trace fossil occurrences. By partitioning multipartite networks of taxa, paleoenvironments, and geologic formations into community units, we distinguish between biostratigraphic zones and paleoenvironmentally restricted biotopes, and provide empirically robust and statistically significant evidence for a global, cosmopolitan assemblage unique to terminal Ediacaran strata. The assemblage is taxonomically depauperate but includes fossils of recognizable eumetazoans, which lived between two episodes of biotic turnover. These turnover events were the first major extinctions of complex life and paved the way for the Cambrian radiation of animals.

          Abstract

          The Ediacara biota—the first large, complex organisms to evolve on Earth—disappeared prior to the radiation of animals during the Cambrian Period. Here, Muscente et al. perform network analysis of Ediacaran fossils and show that there were two global extinction events before the Cambrian radiation.

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          A global genetic interaction network maps a wiring diagram of cellular function.

          We generated a global genetic interaction network for Saccharomyces cerevisiae, constructing more than 23 million double mutants, identifying about 550,000 negative and about 350,000 positive genetic interactions. This comprehensive network maps genetic interactions for essential gene pairs, highlighting essential genes as densely connected hubs. Genetic interaction profiles enabled assembly of a hierarchical model of cell function, including modules corresponding to protein complexes and pathways, biological processes, and cellular compartments. Negative interactions connected functionally related genes, mapped core bioprocesses, and identified pleiotropic genes, whereas positive interactions often mapped general regulatory connections among gene pairs, rather than shared functionality. The global network illustrates how coherent sets of genetic interactions connect protein complex and pathway modules to map a functional wiring diagram of the cell.
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            Finding community structure in very large networks

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              The Cambrian conundrum: early divergence and later ecological success in the early history of animals.

              Diverse bilaterian clades emerged apparently within a few million years during the early Cambrian, and various environmental, developmental, and ecological causes have been proposed to explain this abrupt appearance. A compilation of the patterns of fossil and molecular diversification, comparative developmental data, and information on ecological feeding strategies indicate that the major animal clades diverged many tens of millions of years before their first appearance in the fossil record, demonstrating a macroevolutionary lag between the establishment of their developmental toolkits during the Cryogenian [(850 to 635 million years ago (Ma)], and the later ecological success of metazoans during the Ediacaran (635 to 541 Ma) and Cambrian (541 to 488 Ma) periods. We argue that this diversification involved new forms of developmental regulation, as well as innovations in networks of ecological interaction within the context of permissive environmental circumstances.
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                Author and article information

                Contributors
                a.d.muscente@utexas.edu
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                22 February 2019
                22 February 2019
                2019
                : 10
                : 911
                Affiliations
                [1 ]ISNI 000000041936754X, GRID grid.38142.3c, Department of Earth and Planetary Sciences, , Harvard University, ; Cambridge, MA 02138 USA
                [2 ]ISNI 0000 0001 2254 1834, GRID grid.415877.8, Trofimuk Institute of Petroleum Geology and Geophysics, , Siberian Branch Russian Academy of Sciences, ; Novosibirsk, 630090 Russia
                [3 ]ISNI 0000000419368956, GRID grid.168010.e, Department of Geological Sciences, , Stanford University, ; Stanford, CA 94305 USA
                [4 ]ISNI 0000 0001 2154 235X, GRID grid.25152.31, Department of Geological Sciences, , University of Saskatchewan, ; Saskatoon, SK S7n 5E2 Canada
                [5 ]ISNI 0000 0001 2160 9198, GRID grid.33647.35, Department of Earth and Environmental Sciences, , Rensselaer Polytechnic Institute, Jonsson-Rowland Science Center, ; 1W19, 110 8th Street, Troy, NY 12180 USA
                [6 ]ISNI 0000 0004 0609 3260, GRID grid.256835.f, Earth and Environmental Science Program, , Harrisburg University of Science and Technology, ; Harrisburg, PA 17101 USA
                [7 ]ISNI 0000 0001 2162 3504, GRID grid.134936.a, Department of Geological Sciences, , University of Missouri, ; Columbia, MO 65211 USA
                [8 ]ISNI 0000 0001 2162 3504, GRID grid.134936.a, X-ray Microanalysis Core Facility, , University of Missouri, ; Columbia, MO 65211 USA
                [9 ]ISNI 0000 0001 2323 7340, GRID grid.418276.e, Geophysical Laboratory, , Carnegie Institution for Science, ; 5251 Broad Branch Road, Washington, D.C 20015 USA
                [10 ]ISNI 000000041936754X, GRID grid.38142.3c, Department of Organismic and Evolutionary Biology, , Harvard University, ; Cambridge, MA 02138 USA
                [11 ]ISNI 0000 0004 1936 9924, GRID grid.89336.37, Present Address: Department of Geological Sciences, Jackson School of Geoscience, , University of Texas at Austin, ; Austin, TX 78712 USA
                Author information
                http://orcid.org/0000-0003-4875-5261
                http://orcid.org/0000-0003-4726-0355
                Article
                8837
                10.1038/s41467-019-08837-3
                6384941
                30796215
                82ffd8a3-9db0-4bc7-9dad-e307e33c9099
                © The Author(s) 2019

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 20 September 2018
                : 28 January 2019
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