Complete Genome Sequence of  Aeromonas rivipollensis  KN-Mc-11N1, Isolated from a Wild Nutria ( Myocastor coypus ) in South Korea

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Abstract

We report here the complete genome sequence of Aeromonas rivipollensis KN-Mc-11N1, which was isolated from a wild nutria ( Myocastor coypus) in South Korea. Genomic analysis indicated that A. rivipollensis may have zoonotic potential similar to that of other aeromonads, and nutria could be one of the sources of transmission of zoonotic pathogens to humans.

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Phylogenetic analyses of the genus Aeromonas based on housekeeping gene sequencing and its influence on systematics

A. Navarro, A. Martinez-Murcia (2018)

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The occurrence and antibiotic resistance of motile Aeromonas in livestock.

E Ceylan, Mustafa Berktaş, Zahid Ağaoğlu (2009)

The present study was carried out to assess the prevalence of motile Aeromonas spp. in the faeces of clinically healthy sheep, cattle and horses and evaluate their susceptibility to some anti-microbial agents. Rectal swabs from 120 sheep, 85 cattle and 20 horses were examined for Aeromonas species using alkaline peptone water (pH 8.4) as the enrichment medium and Aeromonas Selective Agar containing 5 mg/l ampicillin as the isolation medium. Identification and antibiotic resistance of motile Aeromonas strains was performed using Gram Negative Enteric ID panel. Motile aeromonads were isolated from 12 (10%) sheep, 7 (8.2%) cattle and 1 (5%) horse. Of these 20 aeromonad isolates, 13 were A. caviae, 6 were A.sobria and 1 was A. hydrophila. Aeromonas species in the faeces of livestock might pose a public health problem for humans who are in direct contact with contaminated animals. However, further studies should be performed on aeromonads relating to their transmission between animals and humans.

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Is Open Access

Delineation of Taxonomic Species within Complex of Species: Aeromonas media and Related Species as a Test Case

Emilie Talagrand-Reboul, Frédéric Roger, Jean-Luc Kimper … (2017)

Aeromonas media is an opportunistic pathogen for human and animals mainly found in aquatic habitats and which has been noted for significant genomic and phenotypic heterogeneities. We aimed to better understand the population structure and diversity of strains currently affiliated to A. media and the related species A. rivipollensis. Forty-one strains were included in a population study integrating, multilocus genetics, phylogenetics, comparative genomics, as well as phenotypics, lifestyle, and evolutionary features. Sixteen gene-based multilocus phylogeny delineated three clades. Clades corresponded to different genomic groups or genomospecies defined by phylogenomic metrics ANI (average nucleotide identity) and isDDH (in silico DNA-DNA hybridization) on 14 whole genome sequences. DL-lactate utilization, cefoxitin susceptibility, nucleotide signatures, ribosomal multi-operon diversity, and differences in relative effect of recombination and mutation (i.e., in evolution mode) distinguished the two species Aeromonas media and Aeromonas rivipollensis. The description of these two species was emended accordingly. The genome metrics and comparative genomics suggested that a third clade is a distinct genomospecies. Beside the species delineation, genetic and genomic data analysis provided a more comprehensive knowledge of the cladogenesis determinants at the root and inside A. media species complex among aeromonads. Particular lifestyles and phenotypes as well as major differences in evolution modes may represent putative factors associated with lineage emergence and speciation within the A. media complex. Finally, the integrative and populational approach presented in this study is considered broadly in order to conciliate the delineation of taxonomic species and the population structure in bacterial genera organized in species complexes.

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Author and article information

Contributors

David A. Baltrus: Role: Editor

Journal

Journal ID (nlm-ta): Microbiol Resour Announc

Journal ID (iso-abbrev): Microbiol Resour Announc

Journal ID (hwp): ga

Journal ID (pmc): mra

Journal ID (publisher-id): MRA

Title: Microbiology Resource Announcements

Publisher: American Society for Microbiology (1752 N St., N.W., Washington, DC )

ISSN (Electronic): 2576-098X

Publication date (Electronic): 2 August 2018

Publication date Collection: August 2018

Volume: 7

Issue: 4

Electronic Location Identifier: e00907-18

Affiliations

[a ]Infectious Disease Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea

[b ]Department of Animal Science, College of Life Sciences, Pusan National University, Miryang, Republic of Korea

[c ]Bio-analytical Science Division, University of Science and Technology (UST), Daejeon, Republic of Korea

[d ]iNtRON Biotechnology, Inc., Seongnam, Republic of Korea

[e ]Division of Ecological Conservation Research, National Institute of Ecology, Seocheon, Republic of Korea

University of Arizona

Author notes

Address correspondence to Do-Hun Lee, eco0407@ 123456nie.re.kr , or Ji Hyung Kim, kzh81@ 123456kribb.re.kr .

S.Y.P. and S.R.L. contributed equally to this work.

Citation Park SY, Lim SR, Son JS, Kim HK, Yoon S-W, Jeong DG, Lee M-S, Lee JR, Lee D-H, Kim JH. 2018. Complete genome sequence of Aeromonas rivipollensis KN-Mc-11N1, isolated from a wild nutria ( Myocastor coypus) in South Korea. Microbiol Resour Announc 7:e00907-18. https://doi.org/10.1128/MRA.00907-18.

Article

Publisher ID: MRA00907-18

DOI: 10.1128/MRA.00907-18

PMC ID: 6256423

SO-VID: 83236219-a912-4b81-bd87-0fa21d6ed926

License:

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

History

Date received : 26 June 2018

Date accepted : 6 July 2018

Page count

Figures: 0, Tables: 0, Equations: 0, References: 13, Pages: 2, Words: 1424

Funding

Funded by: Ministry of Agriculture, Food and Rural Affairs (MAFRA), https://doi.org/10.13039/501100003624;

Award ID: 817029-03-2-SB010

Award Recipient : Jee Soo Son

Funded by: Ministry of Science, ICT and Future Planning (MSIP), https://doi.org/10.13039/501100003621;

Award ID: 2013M3A6B2078954

Award Recipient : Ji Hyung Kim

Funded by: Ministry of Environment (MOE), https://doi.org/10.13039/501100003562;

Award ID: NIE201748

Award Recipient : Do-Hun Lee

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cover-date August 2018

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Complete Genome Sequence of Aeromonas rivipollensis KN-Mc-11N1, Isolated from a Wild Nutria (Myocastor coypus) in South Korea

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Genome Integrity

Most cited references 10

Phylogenetic analyses of the genus Aeromonas based on housekeeping gene sequencing and its influence on systematics

The occurrence and antibiotic resistance of motile Aeromonas in livestock.

Delineation of Taxonomic Species within Complex of Species: Aeromonas media and Related Species as a Test Case

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