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      R software package based statistical optimization of process components to simultaneously enhance the bacterial growth, laccase production and textile dye decolorization with cytotoxicity study

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          Abstract

          The thermophilic bacterium, Bacillus licheniformis U1 is used for the optimization of bacterial growth (R1), laccase production (R2) and synthetic disperse blue DBR textile dye decolorization (R3) in the present study. Preliminary optimization has been performed by one variable at time (OVAT) approach using four media components viz., dye concentration, copper sulphate concentration, pH, and inoculum size. Based on OVAT result further statistical optimization of R1, R2 and R3 performed by Box–Behnken design (BBD) using response surface methodology (RSM) in R software with R Commander package. The total 29 experimental runs conducted in the experimental design study towards the construction of a quadratic model. The model indicated that dye concentration 110 ppm, copper sulphate 0.2 mM, pH 7.5 and inoculum size 6% v/v were found to be optimum to maximize the laccase production and bacterial growth. Whereas, maximum dye decolorization achieved in media containing dye concentration 110 ppm, copper sulphate 0.6 mM, pH 6 and inoculum size 6% v/v. R package predicted R 2 of R1, R2 and R3 were 0.9917, 0.9831 and 0.9703 respectively; likened to Design-Expert (Stat-Ease) (DOE) predicted R 2 of R1, R2, and R3 were 0.9893, 0.9822 and 0.8442 respectively. The values obtained by R software were more precise, reliable and reproducible, compared to the DOE model. The laccase production was 1.80 fold increased, and 2.24 fold enhancement in dye decolorization was achieved using optimized medium than initial experiments. Moreover, the laccase-treated sample demonstrated the less cytotoxic effect on L132 and MCF-7 cell lines compared to untreated sample using MTT assay. Higher cell viability and lower cytotoxicity observed in a laccase-treated sample suggest the impending application of bacterial laccase in the reduction of toxicity of dye to design rapid biodegradation process.

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          Basic and applied aspects in the microbial degradation of azo dyes.

          Lori Stolz (2001)
          Azo dyes are the most important group of synthetic colorants. They are generally considered as xenobiotic compounds that are very recalcitrant against biodegradative processes. Nevertheless, during the last few years it has been demonstrated that several microorganisms are able, under certain environmental conditions, to transform azo dyes to non-colored products or even to completely mineralize them. Thus, various lignolytic fungi were shown to decolorize azo dyes using ligninases, manganese peroxidases or laccases. For some model dyes, the degradative pathways have been investigated and a true mineralization to carbon dioxide has been shown. The bacterial metabolism of azo dyes is initiated in most cases by a reductive cleavage of the azo bond, which results in the formation of (usually colorless) amines. These reductive processes have been described for some aerobic bacteria, which can grow with (rather simple) azo compounds. These specifically adapted microorganisms synthesize true azoreductases, which reductively cleave the azo group in the presence of molecular oxygen. Much more common is the reductive cleavage of azo dyes under anaerobic conditions. These reactions usually occur with rather low specific activities but are extremely unspecific with regard to the organisms involved and the dyes converted. In these unspecific anaerobic processes, low-molecular weight redox mediators (e.g. flavins or quinones) which are enzymatically reduced by the cells (or chemically by bulk reductants in the environment) are very often involved. These reduced mediator compounds reduce the azo group in a purely chemical reaction. The (sulfonated) amines that are formed in the course of these reactions may be degraded aerobically. Therefore, several (laboratory-scale) continuous anaerobic/aerobic processes for the treatment of wastewaters containing azo dyes have recently been described.
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            Microbial decolourisation and degradation of textile dyes.

            Dyes and dyestuffs find use in a wide range of industries but are of primary importance to textile manufacturing. Wastewater from the textile industry can contain a variety of polluting substances including dyes. Increasingly, environmental legislation is being imposed to control the release of dyes, in particular azo-based compounds, into the environment. The ability of microorganisms to decolourise and metabolise dyes has long been known, and the use of bioremediation based technologies for treating textile wastewater has attracted interest. Within this review, we investigate the mechanisms by which diverse categories of microorganisms, such as the white-rot fungi and anaerobic bacterial consortia, bring about the degradation of dyestuffs.
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              Removal of Dyes from the Effluent of Textile and Dyestuff Manufacturing Industry: A Review of Emerging Techniques With Reference to Biological Treatment

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: SoftwareRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: MethodologyRole: ValidationRole: Writing – review & editing
                Role: Project administrationRole: SupervisionRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                2 May 2018
                2018
                : 13
                : 5
                : e0195795
                Affiliations
                [1 ] Department of Biosciences (UGC-SAP-II), Veer Narmad South Gujarat University, Surat, Gujarat, INDIA
                [2 ] Bioinformatics and Supercomputer Laboratory, Department of Biosciences (UGC-SAP-II), Veer Narmad South Gujarat University, Surat, Gujarat, INDIA
                Universidad Nacional Autonoma de Mexico Centro de Nanociencias y Nanotecnologia, MEXICO
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-7525-0624
                Article
                PONE-D-17-31831
                10.1371/journal.pone.0195795
                5931462
                29718934
                837ccf95-d51b-442f-a394-72f275ee285e
                © 2018 Bhavsar et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 1 September 2017
                : 29 March 2018
                Page count
                Figures: 6, Tables: 8, Pages: 18
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100001501, University Grants Commission;
                Award ID: 201314-BSR-10122-1
                Award Recipient :
                The authors gratefully acknowledge the University Grant Commission (UGC), Govt. of India, New Delhi that funded the work as part of SAP (Special Assistance Programme) and BSR support (F.7/327/2011) awarded to Department of Biosciences, Veer Narmad South Gujarat University, Surat, Gujarat, India. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Biochemistry
                Enzymology
                Enzymes
                Laccases
                Biology and Life Sciences
                Biochemistry
                Proteins
                Enzymes
                Laccases
                Computer and Information Sciences
                Software Engineering
                Software Tools
                Engineering and Technology
                Software Engineering
                Software Tools
                Physical Sciences
                Chemistry
                Chemical Compounds
                Salts
                Sulfates
                Computer and Information Sciences
                Software Engineering
                Software Design
                Engineering and Technology
                Software Engineering
                Software Design
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Amines
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Amines
                Biology and Life Sciences
                Toxicology
                Cytotoxicity
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Toxicology
                Cytotoxicity
                Biology and Life Sciences
                Organisms
                Bacteria
                Bacillus
                Biology and Life Sciences
                Microbiology
                Medical Microbiology
                Microbial Pathogens
                Bacterial Pathogens
                Bacillus
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Pathogens
                Microbial Pathogens
                Bacterial Pathogens
                Bacillus
                Research and Analysis Methods
                Research Design
                Experimental Design
                Custom metadata
                All relevant data are within the paper and its Supporting Information files.

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