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      Liquid-to-solid phase transition of oskar ribonucleoprotein granules is essential for their function in Drosophila embryonic development

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          Summary

          Asymmetric localization of oskar ribonucleoprotein (RNP) granules to the oocyte posterior is crucial for abdominal patterning and germline formation in the Drosophila embryo. We show that oskar RNP granules in the oocyte are condensates with solid-like physical properties. Using purified oskar RNA and scaffold proteins Bruno and Hrp48, we confirm in vitro that oskar granules undergo a liquid-to-solid phase transition. Whereas the liquid phase allows RNA incorporation, the solid phase precludes incorporation of additional RNA while allowing RNA-dependent partitioning of client proteins. Genetic modification of scaffold granule proteins or tethering the intrinsically disordered region of human fused in sarcoma (FUS) to oskar mRNA allowed modulation of granule material properties in vivo. The resulting liquid-like properties impaired oskar localization and translation with severe consequences on embryonic development. Our study reflects how physiological phase transitions shape RNA-protein condensates to regulate the localization and expression of a maternal RNA that instructs germline formation.

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          Highlights

          • oskar RNP granules in the developing oocyte are solid-like condensates

          • oskar RNP granules undergo liquid-to-solid phase transition in vitro

          • The liquid phase incorporates mRNA, while the solid phase enriches specific proteins

          • Perturbing the solid state impairs oskar localization, translation, and development

          Abstract

          Liquid-to-solid phase transition of oskar RNP granules ensures Drosophila embryonic development by regulating oskar mRNA localization and translation.

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          Fiji: an open-source platform for biological-image analysis.

          Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.
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            Jalview Version 2—a multiple sequence alignment editor and analysis workbench

            Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk
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              Automated electron microscope tomography using robust prediction of specimen movements.

              A new method was developed to acquire images automatically at a series of specimen tilts, as required for tomographic reconstruction. The method uses changes in specimen position at previous tilt angles to predict the position at the current tilt angle. Actual measurement of the position or focus is skipped if the statistical error of the prediction is low enough. This method allows a tilt series to be acquired rapidly when conditions are good but falls back toward the traditional approach of taking focusing and tracking images when necessary. The method has been implemented in a program, SerialEM, that provides an efficient environment for data acquisition. This program includes control of an energy filter as well as a low-dose imaging mode, in which tracking and focusing occur away from the area of interest. The program can automatically acquire a montage of overlapping frames, allowing tomography of areas larger than the field of the CCD camera. It also includes tools for navigating between specimen positions and finding regions of interest.
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                Author and article information

                Contributors
                Journal
                Cell
                Cell
                Cell
                Cell Press
                0092-8674
                1097-4172
                14 April 2022
                14 April 2022
                : 185
                : 8
                : 1308-1324.e23
                Affiliations
                [1 ]Developmental Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany
                [2 ]Advanced Light Microscopy Facility, European Molecular Biology Laboratory, Heidelberg 69117, Germany
                [3 ]Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg 69117, Germany
                Author notes
                []Corresponding author julia.mahamid@ 123456embl.de
                [∗∗ ]Corresponding author anne.ephrussi@ 123456embl.org
                [4]

                Lead contact

                Article
                S0092-8674(22)00202-1
                10.1016/j.cell.2022.02.022
                9042795
                35325593
                83ead868-f842-45cb-97d1-eb451eafe0b2
                © 2022 The Author(s)

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

                History
                : 30 March 2021
                : 24 November 2021
                : 18 February 2022
                Categories
                Article

                Cell biology
                ribonucleoprotein granules,rnp granules,biomolecular condensates,phase separation,material properties,oskar mrna,embryonic development,rna localization,translation control

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