A Cytoscape app for motif enumeration with ISMAGS.

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Abstract

We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis.

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Journal

Journal ID (iso-abbrev): Bioinformatics

Title: Bioinformatics (Oxford, England)

Publisher: Oxford University Press (OUP)

ISSN (Electronic): 1367-4811

ISSN (Print): 1367-4803

Publication date (Electronic): February 01 2017

Volume: 33

Issue: 3

Affiliations

[1 ] Department of Plant Systems Biology, VIB, Ghent, Belgium.

[2 ] Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.

[3 ] Bioinformatics Institute Ghent, Ghent University, Ghent, Belgium.

[4 ] Department of Information Technology (INTEC), Ghent University - iMinds, Ghent, Belgium.

[5 ] Genomics Research Institute, University of Pretoria, Pretoria, South Africa.

Article

Publisher Item ID: 2568848

DOI: 10.1093/bioinformatics/btw626

PubMed ID: 28158465

SO-VID: 842743f6-743f-427d-b649-7e3aa3e83281

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