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      TRIP13 is a protein-remodeling AAA+ ATPase that catalyzes MAD2 conformation switching

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          Abstract

          The AAA+ family ATPase TRIP13 is a key regulator of meiotic recombination and the spindle assembly checkpoint, acting on signaling proteins of the conserved HORMA domain family. Here we present the structure of the Caenorhabditis elegans TRIP13 ortholog PCH-2, revealing a new family of AAA+ ATPase protein remodelers. PCH-2 possesses a substrate-recognition domain related to those of the protein remodelers NSF and p97, while its overall hexameric architecture and likely structural mechanism bear close similarities to the bacterial protein unfoldase ClpX. We find that TRIP13, aided by the adapter protein p31(comet), converts the HORMA-family spindle checkpoint protein MAD2 from a signaling-active ‘closed’ conformer to an inactive ‘open’ conformer. We propose that TRIP13 and p31(comet) collaborate to inactivate the spindle assembly checkpoint through MAD2 conformational conversion and disassembly of mitotic checkpoint complexes. A parallel HORMA protein disassembly activity likely underlies TRIP13's critical regulatory functions in meiotic chromosome structure and recombination.

          DOI: http://dx.doi.org/10.7554/eLife.07367.001

          eLife digest

          The genetic material inside human and other animal cells is made of DNA and is packaged in structures called chromosomes. Before a cell divides, the entire set of chromosomes is copied so that each chromosome is now made of two identical sister ‘chromatids’.

          Next, the chromosomes line up on a structure called the spindle, which is made of filaments called microtubules. Cells have a surveillance system known as the spindle assembly checkpoint that halts cell division until every chromosome is correctly aligned on the spindle. Once the chromosomes are in place, the checkpoint is turned off and the spindle pulls the chromatids apart so that each daughter cell receives a complete set of chromosomes.

          A protein called MAD2 plays an important role in the spindle assembly checkpoint. It can adopt two distinct shapes: in the ‘closed’ shape it is active and halts cell division, but in the ‘open’ shape it is inactive and allows cell division to proceed. Another protein called TRIP13 can help turn off the checkpoint, but it is not clear how this works or whether TRIP13 acts on MAD2 directly.

          Here, Ye et al. studied these proteins using a technique called X-ray crystallography and several biochemical techniques. The experiments show that TRIP13 belongs to a family of proteins known as ‘AAA-ATPases’, which can unfold proteins to alter their activity. Ye et al. found that TRIP13 binds to an adaptor protein that allows it to bind to the closed form of MAD2. TRIP13 then unfolds a part of the MAD2 protein, converting MAD2 into the open shape.

          Ye et al. propose that, once all chromosomes are lined up on the spindle, TRIP13 turns off the spindle assembly checkpoint by converting closed MAD2 to open MAD2. Also, when cells are not undergoing cell division, TRIP13 may maintain MAD2 in the open shape to prevent cells from turning on the spindle assembly checkpoint at the wrong time. Further work will be needed to show how TRIP13 recognizes the closed form of MAD2, and whether it can act in a similar way on other proteins in the cell.

          DOI: http://dx.doi.org/10.7554/eLife.07367.002

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          Most cited references64

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          NIH Image to ImageJ: 25 years of image analysis.

          For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.
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            The spindle-assembly checkpoint in space and time.

            In eukaryotes, the spindle-assembly checkpoint (SAC) is a ubiquitous safety device that ensures the fidelity of chromosome segregation in mitosis. The SAC prevents chromosome mis-segregation and aneuploidy, and its dysfunction is implicated in tumorigenesis. Recent molecular analyses have begun to shed light on the complex interaction of the checkpoint proteins with kinetochores--structures that mediate the binding of spindle microtubules to chromosomes in mitosis. These studies are finally starting to reveal the mechanisms of checkpoint activation and silencing during mitotic progression.
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              Linking crystallographic model and data quality.

              In macromolecular x-ray crystallography, refinement R values measure the agreement between observed and calculated data. Analogously, R(merge) values reporting on the agreement between multiple measurements of a given reflection are used to assess data quality. Here, we show that despite their widespread use, R(merge) values are poorly suited for determining the high-resolution limit and that current standard protocols discard much useful data. We introduce a statistic that estimates the correlation of an observed data set with the underlying (not measurable) true signal; this quantity, CC*, provides a single statistically valid guide for deciding which data are useful. CC* also can be used to assess model and data quality on the same scale, and this reveals when data quality is limiting model improvement.
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                Author and article information

                Contributors
                Role: Reviewing editor
                Journal
                eLife
                eLife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                2050-084X
                28 April 2015
                2015
                : 4
                : e07367
                Affiliations
                [1 ]Ludwig Institute for Cancer Research, San Diego Branch , La Jolla, United States
                [2 ]deptNational Resource for Automated Molecular Microscopy, Department of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla, United States
                [3 ]deptDepartment of Cellular and Molecular Medicine , University of California, San Diego , La Jolla, United States
                Stanford University , United States
                Stanford University , United States
                Author notes
                [* ]For correspondence: kcorbett@ 123456ucsd.edu
                Author information
                http://orcid.org/0000-0001-5854-2388
                Article
                07367
                10.7554/eLife.07367
                4439613
                25918846
                842d148a-4888-4142-a133-0204498b1b73
                © 2015, Ye et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 07 March 2015
                : 21 April 2015
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, universityNational Institutes of Health (NIH);
                Award ID: R01GM104141
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000912, March of Dimes Foundation (March of Dimes Births Defect Foundation);
                Award ID: FY14-251
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100006156, Sidney Kimmel Foundation for Cancer Research;
                Award ID: Ludwig Institute for Cancer Research
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, universityNational Institutes of Health (NIH);
                Award ID: GM103310
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000015, U.S. Department of Energy (Department of Energy);
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, universityNational Institutes of Health (NIH);
                Award ID: P41GM103393
                Award Recipient :
                Funded by: FundRef http://dx.doi.org/10.13039/100000002, universityNational Institutes of Health (NIH);
                Award ID: GM103403
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Biochemistry
                Biophysics and Structural Biology
                Custom metadata
                2.3
                TRIP13 inactivates the spindle assembly checkpoint by converting MAD2 from its active ‘closed’ state to its inactive ‘open’ state.

                Life sciences
                spindle assembly checkpoint,aaa+ atpase,horma domain protein,c. elegans,mouse
                Life sciences
                spindle assembly checkpoint, aaa+ atpase, horma domain protein, c. elegans, mouse

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