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      Secreted PGK1 and IGFBP2 contribute to the bystander effect of miR-10b gene editing in glioma

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          Abstract

          MicroRNA-10b (miR-10b) is an essential glioma driver and one of the top candidates for targeted therapies for glioblastoma and other cancers. This unique miRNA controls glioma cell cycle and viability via an array of established conventional and unconventional mechanisms. Previously reported CRISPR-Cas9-mediated miR-10b gene editing of glioma cells in vitro and established orthotopic glioblastoma in mouse models demonstrated the efficacy of this approach and its promise for therapy development. However, therapeutic gene editing in patients’ brain tumors may be hampered, among other factors, by the imperfect delivery and distribution of targeting vectors. Here, we demonstrate that miR-10b gene editing in glioma cells triggers a potent bystander effect that leads to the selective cell death of the unedited glioma cells without affecting the normal neuroglial cells. The effect is mediated by the secreted miR-10b targets phosphoglycerate kinase 1 (PGK1) and insulin-like growth factor binding protein 2 (IGFBP2) that block cell-cycle progression and induce glioma cell death. These findings further support the feasibility of therapeutic miR-10b editing without the need to target every cell of the tumor.

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          Abstract

          Gene editing of an oncogenic microRNA-10b (miR-10b) may provide a targeted, highly specific molecular therapy for glioblastoma brain tumors. In this article, Krichevsky and colleagues demonstrate that cancer cells edited for the miR-10b gene secrete death-promoting factors enhancing tumor killing, further supporting the development of this promising therapeutic strategy.

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          Most cited references59

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          Multiplex genome engineering using CRISPR/Cas systems.

          Functional elucidation of causal genetic variants and elements requires precise genome editing technologies. The type II prokaryotic CRISPR (clustered regularly interspaced short palindromic repeats)/Cas adaptive immune system has been shown to facilitate RNA-guided site-specific DNA cleavage. We engineered two different type II CRISPR/Cas systems and demonstrate that Cas9 nucleases can be directed by short RNAs to induce precise cleavage at endogenous genomic loci in human and mouse cells. Cas9 can also be converted into a nicking enzyme to facilitate homology-directed repair with minimal mutagenic activity. Lastly, multiple guide sequences can be encoded into a single CRISPR array to enable simultaneous editing of several sites within the mammalian genome, demonstrating easy programmability and wide applicability of the RNA-guided nuclease technology.
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            Predicting effective microRNA target sites in mammalian mRNAs

            MicroRNA targets are often recognized through pairing between the miRNA seed region and complementary sites within target mRNAs, but not all of these canonical sites are equally effective, and both computational and in vivo UV-crosslinking approaches suggest that many mRNAs are targeted through non-canonical interactions. Here, we show that recently reported non-canonical sites do not mediate repression despite binding the miRNA, which indicates that the vast majority of functional sites are canonical. Accordingly, we developed an improved quantitative model of canonical targeting, using a compendium of experimental datasets that we pre-processed to minimize confounding biases. This model, which considers site type and another 14 features to predict the most effectively targeted mRNAs, performed significantly better than existing models and was as informative as the best high-throughput in vivo crosslinking approaches. It drives the latest version of TargetScan (v7.0; targetscan.org), thereby providing a valuable resource for placing miRNAs into gene-regulatory networks. DOI: http://dx.doi.org/10.7554/eLife.05005.001
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              Improved vectors and genome-wide libraries for CRISPR screening.

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                Author and article information

                Contributors
                Journal
                Mol Ther Nucleic Acids
                Mol Ther Nucleic Acids
                Molecular Therapy. Nucleic Acids
                American Society of Gene & Cell Therapy
                2162-2531
                02 January 2023
                14 March 2023
                02 January 2023
                : 31
                : 265-275
                Affiliations
                [1 ]Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Harvard Initiative for RNA Medicine, Boston, MA 02115, USA
                [2 ]Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA
                Author notes
                []Corresponding author: Anna M. Krichevsky, Ann Romney Center for Neurologic Diseases, Hale Building for Transformative Medicine, 60 Fenwood Rd, Room 9002T, Boston, MA 02115, USA. akrichevsky@ 123456bwh.harvard.edu
                [3]

                These authors contributed equally

                Article
                S2162-2531(23)00001-X
                10.1016/j.omtn.2022.12.018
                9852814
                8488276c-41cf-4815-9c06-917d073a65d9
                © 2023 The Authors

                This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).

                History
                : 8 August 2022
                : 31 December 2022
                Categories
                Original Article

                Molecular medicine
                mt: non-coding rnas,mir-10b,glioblastoma,gene editing,bystander effect,pgk1,igfbp2
                Molecular medicine
                mt: non-coding rnas, mir-10b, glioblastoma, gene editing, bystander effect, pgk1, igfbp2

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