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      Functional roles of Na +/K +-ATPase in active ammonia excretion and seawater acclimation in the giant mudskipper, Periophthalmodon schlosseri

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          Abstract

          The giant mudskipper, Periophthalmodon schlosseri, is an amphibious fish that builds burrows in the mudflats. It can actively excrete ammonia through its gills, and tolerate high environmental ammonia. This study aimed to examine the effects of seawater (salinity 30; SW) acclimation and/or environmental ammonia exposure on the kinetic properties of Na +/K +-ATPase (Nka) from, and mRNA expression and protein abundance of nka/Nka α–subunit isoforms in, the gills of P. schlosseri pre-acclimated to slightly brackish water (salinity 3; SBW). Our results revealed that the Nka from the gills of P. schlosseri pre-acclimated to SBW for 2 weeks had substantially higher affinity to (or lower K m for) K + than NH + 4, and its affinity to NH + 4 decreased significantly after 6-days exposure to 75 mmol l −1 NH 4Cl in SBW. Hence, Nka transported K + selectively to maintain intracellular K + homeostasis, instead of transporting NH + 4 from the blood into ionocytes during active NH + 4 excretion as previously suggested. Two nkaα isoforms, nkaα 1 and nkaα 3, were cloned and sequenced from the gills of P. schlosseri. Their deduced amino acid sequences had K + binding sites identical to that of Nkaα1c from Anabas testudineus, indicating that they could effectively differentiate K + from NH + 4. Six days of exposure to 75 mmol l −1 NH 4Cl in SBW, or to SW with or without 50 mmol l −1 NH 4Cl led to significant increases in Nka activities in the gills of P. schlosseri. However, a significant increase in the comprehensive Nkaα protein abundance was observed only in the gills of fish exposed to 50 mmol l −1 NH 4Cl in SW. Hence, post-translational modification could be an important activity modulator of branchial Nka in P. schlosseri. The fast modulation of Nka activity and concurrent expressions of two branchial nkaα isoforms could in part contribute to the ability of P. schlosseri to survive abrupt transfer between SBW and SW or abrupt exposure to ammonia.

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            Real-time PCR for mRNA quantitation

            Real-time PCR has become one of the most widely used methods of gene quantitation because it has a large dynamic range, boasts tremendous sensitivity, can be highly sequence-specific, has little to no post-amplification processing, and is amenable to increasing sample throughput. However, optimal benefit from these advantages requires a clear understanding of the many options available for running a real-time PCR experiment. Starting with the theory behind real-time PCR, this review discusses the key components of a real-time PCR experiment, including one-step or two-step PCR, absolute versus relative quantitation, mathematical models available for relative quantitation and amplification efficiency calculations, types of normalization or data correction, and detection chemistries. In addition, the many causes of variation as well as methods to calculate intra- and inter-assay variation are addressed.
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              The PSIPRED protein structure prediction server.

              The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply to their sequence: PSIPRED, a highly accurate secondary structure prediction method; MEMSAT 2, a new version of a widely used transmembrane topology prediction method; or GenTHREADER, a sequence profile based fold recognition method. Freely available to non-commercial users at http://globin.bio.warwick.ac.uk/psipred/
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                Author and article information

                Contributors
                Journal
                Front Physiol
                Front Physiol
                Front. Physiol.
                Frontiers in Physiology
                Frontiers Media S.A.
                1664-042X
                23 April 2014
                2014
                : 5
                : 158
                Affiliations
                [1] 1Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University Singapore, Singapore
                [2] 2Department of Biological Sciences, National University of Singapore Singapore, Singapore
                Author notes

                Edited by: Shigehisa Hirose, Tokyo Institute of Technology, Japan

                Reviewed by: Christian K. Tipsmark, University of Arkansas, USA; C. Michele Nawata, University of Arizona, USA

                *Correspondence: Shit F. Chew, Natural Sciences and Science Education, National Institute of Education, Nanyang Technological University, 1 Nanyang Walk, Singapore 637616, Singapore e-mail: sfun.chew@ 123456nie.edu.sg

                This article was submitted to Aquatic Physiology, a section of the journal Frontiers in Physiology.

                Article
                10.3389/fphys.2014.00158
                4006040
                24795653
                850fed79-8b83-44b0-918d-0411864a499b
                Copyright © 2014 Chew, Hiong, Lam, Ong, Wee, Wong and Ip.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 19 February 2014
                : 03 April 2014
                Page count
                Figures: 12, Tables: 2, Equations: 0, References: 69, Pages: 17, Words: 13762
                Categories
                Physiology
                Original Research Article

                Anatomy & Physiology
                air-breathing fish,ammonia toxicity,gills,ionocytes,nitrogen metabolism,osmoregulation

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