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      Synthetic Augmentation and Feature-based Filtering for Improved Cervical Histopathology Image Classification

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          Abstract

          Cervical intraepithelial neoplasia (CIN) grade of histopathology images is a crucial indicator in cervical biopsy results. Accurate CIN grading of epithelium regions helps pathologists with precancerous lesion diagnosis and treatment planning. Although an automated CIN grading system has been desired, supervised training of such a system would require a large amount of expert annotations, which are expensive and time-consuming to collect. In this paper, we investigate the CIN grade classification problem on segmented epithelium patches. We propose to use conditional Generative Adversarial Networks (cGANs) to expand the limited training dataset, by synthesizing realistic cervical histopathology images. While the synthetic images are visually appealing, they are not guaranteed to contain meaningful features for data augmentation. To tackle this issue, we propose a synthetic-image filtering mechanism based on the divergence in feature space between generated images and class centroids in order to control the feature quality of selected synthetic images for data augmentation. Our models are evaluated on a cervical histopathology image dataset with a limited number of patch-level CIN grade annotations. Extensive experimental results show a significant improvement of classification accuracy from 66.3% to 71.7% using the same ResNet18 baseline classifier after leveraging our cGAN generated images with feature-based filtering, which demonstrates the effectiveness of our models.

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          GAN-based Synthetic Medical Image Augmentation for increased CNN Performance in Liver Lesion Classification

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            Automatic cervical cell segmentation and classification in Pap smears.

            Cervical cancer is one of the leading causes of cancer death in females worldwide. The disease can be cured if the patient is diagnosed in the pre-cancerous lesion stage or earlier. A common physical examination technique widely used in the screening is Papanicolaou test or Pap test. In this research, a method for automatic cervical cancer cell segmentation and classification is proposed. A single-cell image is segmented into nucleus, cytoplasm, and background, using the fuzzy C-means (FCM) clustering technique. Four cell classes in the ERUDIT and LCH datasets, i.e., normal, low grade squamous intraepithelial lesion (LSIL), high grade squamous intraepithelial lesion (HSIL), and squamous cell carcinoma (SCC), are considered. The 2-class problem can be achieved by grouping the last 3 classes as one abnormal class. Whereas, the Herlev dataset consists of 7 cell classes, i.e., superficial squamous, intermediate squamous, columnar, mild dysplasia, moderate dysplasia, severe dysplasia, and carcinoma in situ. These 7 classes can also be grouped to form a 2-class problem. These 3 datasets were tested on 5 classifiers including Bayesian classifier, linear discriminant analysis (LDA), K-nearest neighbor (KNN), artificial neural networks (ANN), and support vector machine (SVM). For the ERUDIT dataset, ANN with 5 nucleus-based features yielded the accuracies of 96.20% and 97.83% on the 4-class and 2-class problems, respectively. For the Herlev dataset, ANN with 9 cell-based features yielded the accuracies of 93.78% and 99.27% for the 7-class and 2-class problems, respectively. For the LCH dataset, ANN with 9 cell-based features yielded the accuracies of 95.00% and 97.00% for the 4-class and 2-class problems, respectively. The segmentation and classification performances of the proposed method were compared with that of the hard C-means clustering and watershed technique. The results show that the proposed automatic approach yields very good performance and is better than its counterparts.
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              Nuclei-Based Features for Uterine Cervical Cancer Histology Image Analysis With Fusion-Based Classification.

              Cervical cancer, which has been affecting women worldwide as the second most common cancer, can be cured if detected early and treated well. Routinely, expert pathologists visually examine histology slides for cervix tissue abnormality assessment. In previous research, we investigated an automated, localized, fusion-based approach for classifying squamous epithelium into Normal, CIN1, CIN2, and CIN3 grades of cervical intraepithelial neoplasia (CIN) based on image analysis of 61 digitized histology images. This paper introduces novel acellular and atypical cell concentration features computed from vertical segment partitions of the epithelium region within digitized histology images to quantize the relative increase in nuclei numbers as the CIN grade increases. Based on the CIN grade assessments from two expert pathologists, image-based epithelium classification is investigated with voting fusion of vertical segments using support vector machine and linear discriminant analysis approaches. Leave-one-out is used for the training and testing for CIN classification, achieving an exact grade labeling accuracy as high as 88.5%.
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                Author and article information

                Journal
                24 July 2019
                Article
                1907.10655
                8642e96b-9998-4665-9ad8-36c9fb0fe03d

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

                History
                Custom metadata
                MICCAI 2019
                eess.IV cs.CV

                Computer vision & Pattern recognition,Electrical engineering
                Computer vision & Pattern recognition, Electrical engineering

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