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      An expert botanical feature extraction technique based on phenetic features for identifying plant species

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          Abstract

          In this paper, we present a new method to recognise the leaf type and identify plant species using phenetic parts of the leaf; lobes, apex and base detection. Most of the research in this area focuses on the popular features such as the shape, colour, vein, and texture, which consumes large amounts of computational processing and are not efficient, especially in the Acer database with a high complexity structure of the leaves. This paper is focused on phenetic parts of the leaf which increases accuracy. Detecting the local maxima and local minima are done based on Centroid Contour Distance for Every Boundary Point, using north and south region to recognise the apex and base. Digital morphology is used to measure the leaf shape and the leaf margin. Centroid Contour Gradient is presented to extract the curvature of leaf apex and base. We analyse 32 leaf images of tropical plants and evaluated with two different datasets, Flavia, and Acer. The best accuracy obtained is 94.76% and 82.6% respectively. Experimental results show the effectiveness of the proposed technique without considering the commonly used features with high computational cost.

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          Most cited references15

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          Plant high-throughput phenotyping using photogrammetry and imaging techniques to measure leaf length and rosette area

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            Automating Digital Leaf Measurement: The Tooth, the Whole Tooth, and Nothing but the Tooth

            Many species of plants produce leaves with distinct teeth around their margins. The presence and nature of these teeth can often help botanists to identify species. Moreover, it has long been known that more species native to colder regions have teeth than species native to warmer regions. It has therefore been suggested that fossilized remains of leaves can be used as a proxy for ancient climate reconstruction. Similar studies on living plants can help our understanding of the relationships. The required analysis of leaves typically involves considerable manual effort, which in practice limits the number of leaves that are analyzed, potentially reducing the power of the results. In this work, we describe a novel algorithm to automate the marginal tooth analysis of leaves found in digital images. We demonstrate our methods on a large set of images of whole herbarium specimens collected from Tilia trees (also known as lime, linden or basswood). We chose the genus Tilia as its constituent species have toothed leaves of varied size and shape. In a previous study we extracted leaves automatically from a set of images. Our new algorithm locates teeth on the margins of such leaves and extracts features such as each tooth’s area, perimeter and internal angles, as well as counting them. We evaluate an implementation of our algorithm’s performance against a manually analyzed subset of the images. We found that the algorithm achieves an accuracy of 85% for counting teeth and 75% for estimating tooth area. We also demonstrate that the automatically extracted features are sufficient to identify different species of Tilia using a simple linear discriminant analysis, and that the features relating to teeth are the most useful.
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              Plant Leaf Classification using Probabilistic Integration of Shape, Texture and Margin Features

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Data curationRole: Investigation
                Role: Supervision
                Role: Supervision
                Role: Funding acquisitionRole: Writing – review & editing
                Role: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                8 February 2018
                2018
                : 13
                : 2
                : e0191447
                Affiliations
                [1 ] Department of Computer Science, Liverpool John Moores University, Liverpool, United Kingdom
                [2 ] Universiti Tunku Abdul Rahman, Jalan Sungai Long, Bandar Sungai Long, Cheras, Kajang, Selangor, Malaysia
                [3 ] Media and Games Innovation Centre of Excellence (MaGIC-X) UTM-IRDA Digital Media Centre, Institute of Human Centred, University Industry Research Laboratory (UIRL), Universiti Teknologi Malaysia UTM, Skudai, Johor, Malaysia
                [4 ] Universiti Malaysia Terengganu, Terengganu, Malaysia
                United States Department of Agriculture, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0001-5460-5679
                Article
                PONE-D-17-34973
                10.1371/journal.pone.0191447
                5805256
                29420568
                86fa8608-3196-4f3a-b0c3-c436d90d2a31
                © 2018 Kolivand et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 13 October 2017
                : 4 January 2018
                Page count
                Figures: 17, Tables: 4, Pages: 28
                Funding
                The authors received no specific funding for this work.
                Categories
                Research Article
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Biology and Life Sciences
                Anatomy
                Digestive System
                Teeth
                Medicine and Health Sciences
                Anatomy
                Digestive System
                Teeth
                Biology and Life Sciences
                Anatomy
                Head
                Jaw
                Teeth
                Medicine and Health Sciences
                Anatomy
                Head
                Jaw
                Teeth
                Biology and Life Sciences
                Taxonomy
                Phenetics
                Computer and Information Sciences
                Data Management
                Taxonomy
                Phenetics
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Leaf Veins
                Physical Sciences
                Mathematics
                Applied Mathematics
                Algorithms
                Research and Analysis Methods
                Simulation and Modeling
                Algorithms
                Biology and Life Sciences
                Plant Science
                Plant Taxonomy
                Biology and Life Sciences
                Taxonomy
                Plant Taxonomy
                Computer and Information Sciences
                Data Management
                Taxonomy
                Plant Taxonomy
                Custom metadata
                The data are freely available for readers at flavia.sourceforge.net. The Acer data set is available in the Supporting Information file. The authors confirm that other interested researchers are able to access these data in the same manner as the authors and the authors did not have any special access privilege to the data.

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                Uncategorized

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