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      The Processing, Gene Regulation, Biological Functions, and Clinical Relevance of N4-Acetylcytidine on RNA: A Systematic Review

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          Abstract

          N4-acetylcytidine (ac4C) is often considered to be a conservative, chemically modified nucleoside present on tRNA and rRNA. Recent studies have shown extensive ac4C modifications in human and yeast mRNAs. ac4C helps to correctly read codons during translation and improves translation efficiency and the stability of mRNA. At present, the research of ac4C involves a variety of detection methods. The formation of ac4C is closely related to N-acetyltransferase 10 (NAT10) and its helpers, such as putative tRNA acetyltransferase (TAN1) for tRNA ac4C and small nucleolar RNA (snoRNA) for rRNA ac4C. Also, ac4C is associated with the development, progression, and prognosis of a variety of human diseases. Here, we summarize the history of ac4C research and the detection technologies of ac4C. We then summarized the role and mechanism of ac4C in gene-expression regulation and demonstrated the relevance of ac4C to a variety of human diseases, especially cancer. Finally, we list the future challenges of the ac4C research and demonstrate a research strategy for the interactions among several abundant modified nucleosides on mRNA.

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          Acetylation of Cytidine in mRNA Promotes Translation Efficiency

          Generation of the “epitranscriptome” through post-transcriptional ribonucleoside modification embeds a layer of regulatory complexity into RNA structure and function. Here we describe N4-acetylcytidine (ac4C) as an mRNA modification that is catalyzed by the acetyltransferase NAT10. Transcriptome-wide mapping of ac4C revealed discretely acetylated regions that were enriched within coding sequences. Ablation of NAT10 reduced ac4C detection at the mapped mRNA sites and was globally associated with target mRNA down-regulation. Analysis of mRNA half-lives revealed a NAT10-dependent increase in stability in the cohort of acetylated mRNAs. mRNA acetylation was further demonstrated to enhance substrate translation in vitro and in vivo . Codon content analysis within ac4C peaks uncovered a biased representation of cytidine within wobble sites that was empirically determined to influence mRNA decoding efficiency. These findings expand the repertoire of mRNA modifications to include an acetylated residue and establish a role for ac4C in the regulation of mRNA translation. Post-transcriptional acetylation of cytidines in mammalian mRNAs enhances RNA stability and translation.
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            m(6)A in mRNA: An Ancient Mechanism for Fine-Tuning Gene Expression.

            Modifications in mRNA constitute ancient mechanisms to regulate gene expression post-transcriptionally. N(6)-methyladenosine (m(6)A) is the most prominent mRNA modification, and is installed by a large methyltransferase complex (the m(6)A 'writer'), not only specifically bound by RNA-binding proteins (the m(6)A 'readers'), but also removed by demethylases (the m(6)A 'erasers'). m(6)A mRNA modifications have been linked to regulation at multiple steps in mRNA processing. In analogy to the regulation of gene expression by miRNAs, we propose that the main function of m(6)A is post-transcriptional fine-tuning of gene expression. In contrast to miRNA regulation, which mostly reduces gene expression, we argue that m(6)A provides a fast mean to post-transcriptionally maximize gene expression. Additionally, m(6)A appears to have a second function during developmental transitions by targeting m(6)A-marked transcripts for degradation.
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              Expression of specific inflammasome gene modules stratifies older individuals into two extreme clinical and immunological states

              Differential expression of inflammasome gene modules and inflammasome-activating metabolites correlates with interleukin-1β expression, hypertension, arterial stiffness and longevity in older individuals.
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                Author and article information

                Contributors
                Journal
                Mol Ther Nucleic Acids
                Mol Ther Nucleic Acids
                Molecular Therapy. Nucleic Acids
                American Society of Gene & Cell Therapy
                2162-2531
                08 February 2020
                05 June 2020
                08 February 2020
                : 20
                : 13-24
                Affiliations
                [1 ]Medical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China
                [2 ]Bio-X Institutes, Key Laboratory for the Genetics of Developmental and Neuropsychiatric Disorders (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200030, China
                Author notes
                []Corresponding author: Shiwei Duan, PhD, Medical Genetics Center, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, China. duanshiwei@ 123456nbu.edu.cn
                [3]

                These authors contributed equally to this work.

                Article
                S2162-2531(20)30072-X
                10.1016/j.omtn.2020.01.037
                7068197
                32171170
                873ac61f-2daf-41cc-9cd7-13a3c08c6a5f
                © 2020 The Authors

                This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

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                Categories
                Article

                Molecular medicine
                n4-acetylcytidine,rna,acetyltransferase,nat10,human diseases,cancer,mrna modifications
                Molecular medicine
                n4-acetylcytidine, rna, acetyltransferase, nat10, human diseases, cancer, mrna modifications

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