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      Genetic polymorphisms of the IL6 and NOD2 genes are risk factors for inflammatory reactions in leprosy

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          Abstract

          The pathways that trigger exacerbated immune reactions in leprosy could be determined by genetic variations. Here, in a prospective approach, both genetic and non-genetic variables influencing the amount of time before the development of reactional episodes were studied using Kaplan–Meier survival curves, and the genetic effect was estimated by the Cox proportional-hazards regression model. In a sample including 447 leprosy patients, we confirmed that gender (male), and high bacillary clinical forms are risk factors for leprosy reactions. From the 15 single nucleotide polymorphisms (SNPs) at the 8 candidate genes genotyped ( TNF/ LTA, IFNG, IL10, TLR1, NOD2, SOD2, and IL6) we observed statistically different survival curves for rs751271 at the NOD2 and rs2069845 at the IL6 genes (log-rank p-values = 0.002 and 0.023, respectively), suggesting an influence on the amount of time before developing leprosy reactions. Cox models showed associations between the SNPs rs751271 at NOD2 and rs2069845 at IL6 with leprosy reactions (HR GT = 0.45, p = 0.002; HR AG = 1.88, p = 0.0008, respectively). Finally, IL-6 and IFN-γ levels were confirmed as high, while IL-10 titers were low in the sera of reactional patients. Rs751271-GT genotype-bearing individuals correlated (p = 0.05) with lower levels of IL-6 in sera samples, corroborating the genetic results. Although the experimental size may be considered a limitation of the study, the findings confirm the association of classical variables such as sex and clinical forms with leprosy, demonstrating the consistency of the results. From the results, we conclude that SNPs at the NOD2 and IL6 genes are associated with leprosy reactions as an outcome. NOD2 also has a clear functional pro-inflammatory link that is coherent with the exacerbated responses observed in these patients.

          Author summary

          Leprosy reactions are abrupt inflammatory episodes that can occur before, during or after treatment. Although reactional episodes are the main cause of physical disabilities in patients, there are few genetic studies evaluating this outcome. We studied the influence of both risk factors and genetic markers in leprosy reaction outcomes. For this, we used a population including patients that either did or did not develop a reaction, and we performed a characterization of the genetic markers indicating susceptibility to leprosy. As a result, we identified how variables such as gender and clinical forms influence the amount of time before the occurrence of a reaction. In addition, we highlighted genetic markers related to the timing of the reaction’s occurrence, and associated them with reaction susceptibility. These markers were also related to the production of anti- and pro-inflammatory cytokines. Our study describes the risk factors and genetic components associated with leprosy reactions and can help in the prognosis and monitoring of patients to prevent clinical complications.

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          Most cited references48

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          Classification of leprosy according to immunity. A five-group system.

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            Genomewide association study of leprosy.

            The narrow host range of Mycobacterium leprae and the fact that it is refractory to growth in culture has limited research on and the biologic understanding of leprosy. Host genetic factors are thought to influence susceptibility to infection as well as disease progression. We performed a two-stage genomewide association study by genotyping 706 patients and 1225 controls using the Human610-Quad BeadChip (Illumina). We then tested three independent replication sets for an association between the presence of leprosy and 93 single-nucleotide polymorphisms (SNPs) that were most strongly associated with the disease in the genomewide association study. Together, these replication sets comprised 3254 patients and 5955 controls. We also carried out tests of heterogeneity of the associations (or lack thereof) between these 93 SNPs and disease, stratified according to clinical subtype (multibacillary vs. paucibacillary). We observed a significant association (P<1.00x10(-10)) between SNPs in the genes CCDC122, C13orf31, NOD2, TNFSF15, HLA-DR, and RIPK2 and a trend toward an association (P=5.10x10(-5)) with a SNP in LRRK2. The associations between the SNPs in C13orf31, LRRK2, NOD2, and RIPK2 and multibacillary leprosy were stronger than the associations between these SNPs and paucibacillary leprosy. Variants of genes in the NOD2-mediated signaling pathway (which regulates the innate immune response) are associated with susceptibility to infection with M. leprae. 2009 Massachusetts Medical Society
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              Six Persistent Research Misconceptions

              ABSTRACT Scientific knowledge changes rapidly, but the concepts and methods of the conduct of research change more slowly. To stimulate discussion of outmoded thinking regarding the conduct of research, I list six misconceptions about research that persist long after their flaws have become apparent. The misconceptions are: 1) There is a hierarchy of study designs; randomized trials provide the greatest validity, followed by cohort studies, with case–control studies being least reliable. 2) An essential element for valid generalization is that the study subjects constitute a representative sample of a target population. 3) If a term that denotes the product of two factors in a regression model is not statistically significant, then there is no biologic interaction between those factors. 4) When categorizing a continuous variable, a reasonable scheme for choosing category cut-points is to use percentile-defined boundaries, such as quartiles or quintiles of the distribution. 5) One should always report P values or confidence intervals that have been adjusted for multiple comparisons. 6) Significance testing is useful and important for the interpretation of data. These misconceptions have been perpetuated in journals, classrooms and textbooks. They persist because they represent intellectual shortcuts that avoid more thoughtful approaches to research problems. I hope that calling attention to these misconceptions will spark the debates needed to shelve these outmoded ideas for good.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: SoftwareRole: ValidationRole: VisualizationRole: Writing – original draft
                Role: ConceptualizationRole: InvestigationRole: MethodologyRole: Project administrationRole: SoftwareRole: Writing – original draft
                Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: Writing – review & editing
                Role: Resources
                Role: Resources
                Role: Resources
                Role: Data curationRole: Methodology
                Role: Resources
                Role: Funding acquisitionRole: ResourcesRole: Supervision
                Role: Funding acquisitionRole: ResourcesRole: Supervision
                Role: ConceptualizationRole: Formal analysisRole: MethodologyRole: SoftwareRole: ValidationRole: Writing – review & editing
                Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: Project administrationRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draft
                Role: Editor
                Journal
                PLoS Negl Trop Dis
                PLoS Negl Trop Dis
                plos
                plosntds
                PLoS Neglected Tropical Diseases
                Public Library of Science (San Francisco, CA USA )
                1935-2727
                1935-2735
                17 July 2017
                July 2017
                : 11
                : 7
                : e0005754
                Affiliations
                [1 ] Laboratório de Hanseníase, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, RJ, Brazil
                [2 ] Programa de Computação Científica (PROCC), FIOCRUZ, Rio de Janeiro, RJ, Brazil
                Johns Hopkins Bloomberg School of Public Health, UNITED STATES
                Author notes

                The authors have declared that no competing interests exist.

                [¤a]

                Current address: Departamento de Medicina, Universidade Federal de Alagoas, Arapiraca, AL, Brazil.

                [¤b]

                Current address: Laboratório de Virologia Molecular, Departamento de Genética, Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.

                ‡ These authors share first authorship on this work.

                Author information
                http://orcid.org/0000-0003-2653-0037
                Article
                PNTD-D-16-01786
                10.1371/journal.pntd.0005754
                5531687
                28715406
                874c39de-345b-4c61-8e8a-1abc87f49e56
                © 2017 Sales-Marques et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 4 October 2016
                : 28 June 2017
                Page count
                Figures: 4, Tables: 2, Pages: 16
                Funding
                Funded by: Conselho Nacional de Desenvolvimento Científico (CNPq)
                Award Recipient :
                Funded by: Conselho Nacional de Desenvolvimento Científico (CNPq)
                Award Recipient :
                Funded by: Fundação de Amparo a Pesquisa do Estado do Rio de Janeiro (FAPERJ)
                Award Recipient :
                Funded by: Departamento de Ciências e Tecnologia, Conselho Nacional de Desenvolvimento Científico, Ministério da Saúde/Tecnologia de Insumos Estratégicos (DECIT/CNPq/MS/SCTIE)
                Award ID: 404277/2012-8
                Award Recipient :
                CSM was a Pos Doc funded by Conselho Nacional de Desenvolvimento Científico (CNPq). MOM is a CNPq and Fundação de Amparo a Pesquisa do Estado do Rio de Janeiro (FAPERJ) fellow. This study was supported by a grant from the Brazilian Departamento de Ciências e Tecnologia, Conselho Nacional de Desenvolvimento Científico, Ministério da Saúde/Tecnologia de Insumos Estratégicos (DECIT/CNPq/MS/SCTIE, process number 404277/2012-8). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Medicine and Health Sciences
                Infectious Diseases
                Bacterial Diseases
                Leprosy
                Medicine and Health Sciences
                Tropical Diseases
                Neglected Tropical Diseases
                Leprosy
                Biology and Life Sciences
                Physiology
                Immune Physiology
                Cytokines
                Medicine and Health Sciences
                Physiology
                Immune Physiology
                Cytokines
                Biology and Life Sciences
                Immunology
                Immune System
                Innate Immune System
                Cytokines
                Medicine and Health Sciences
                Immunology
                Immune System
                Innate Immune System
                Cytokines
                Biology and Life Sciences
                Developmental Biology
                Molecular Development
                Cytokines
                Biology and Life Sciences
                Genetics
                Human Genetics
                Biology and Life Sciences
                Genetics
                Heredity
                Genetic Mapping
                Variant Genotypes
                Biology and Life Sciences
                Immunology
                Immune Response
                Inflammation
                Medicine and Health Sciences
                Immunology
                Immune Response
                Inflammation
                Medicine and Health Sciences
                Diagnostic Medicine
                Signs and Symptoms
                Inflammation
                Medicine and Health Sciences
                Pathology and Laboratory Medicine
                Signs and Symptoms
                Inflammation
                Biology and Life Sciences
                Genetics
                Genetics of Disease
                Genetic Predisposition
                Research and Analysis Methods
                Immunologic Techniques
                Immunoassays
                Enzyme-Linked Immunoassays
                Research and Analysis Methods
                Bioassays and Physiological Analysis
                Biochemical Analysis
                Enzyme Assays
                Custom metadata
                vor-update-to-uncorrected-proof
                2017-07-27
                Our institutional ethical committee board allowed us to disclose data as de-identified dataset information regarding clinical parameters and genetic/functional data specific to the research article. So, we have included as supplementary material ( S5 Table and S6 Table) a minimal dataset of individual genetic and functional information.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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