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      Biodiversidata: An Open-Access Biodiversity Database for Uruguay

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          Abstract

          Abstract
          Background

          The continental and marine territories of Uruguay are characterised by a rich convergence of multiple biogeographic ecoregions of the Neotropics, making this country a peculiar biodiversity spot. However, despite the biological significance of Uruguay for the South American subcontinent, the distribution of biodiversity patterns in this country remain poorly understood, given the severe gaps in available records of geographic species distributions. Currently, national biodiversity datasets are not openly available and, thus, a dominant proportion of the primary biodiversity data produced by researchers and institutions across Uruguay remains highly dispersed and difficult to access for the wider scientific and environmental community. In this paper, we aim to fill this gap by developing the first comprehensive, open-access database of biodiversity records for Uruguay (Biodiversidata), which is the result of a large-scale collaboration involving experts working across the entire range of taxonomic diversity found in the country.

          New information

          As part of the first phase of Biodiversidata, we here present a comprehensive database of tetrapod occurrence records native from Uruguay, with the latest taxonomic updates. The database provides primary biodiversity data on extant Amphibia , Reptilia , Aves and Mammalia species recorded within the country. The total number of records collated is 69,380, spanning 673 species and it is available at the Zenodo repository: https://doi.org/10.5281/zenodo.2650169. This is the largest and most geographically and taxonomically comprehensive database of Uruguayan tetrapod species available to date and it represents the first open repository for the country.

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          Most cited references51

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          Biogeographic areas and transition zones of Latin America and the Caribbean islands based on panbiogeographic and cladistic analyses of the entomofauna.

          Track and cladistic biogeographic analyses based on insect taxa are used as a framework to interpret patterns of the Latin American and Caribbean entomofauna by identifying biogeographic areas on the basis of endemicity and arranging them hierarchically in a system of regions, subregions, dominions, and provinces. The Nearctic region, inhabited by Holarctic insect taxa, comprises five provinces: California, Baja California, Sonora, Mexican Plateau, and Tamaulipas. The Mexican transition zone comprises five provinces: Sierra Madre Occidental, Sierra Madre Oriental, Transmexican Volcanic Belt, Balsas Basin, and Sierra Madre del Sur. The Neotropical region, which harbors many insect taxa with close relatives in the tropical areas of the Old World, comprises four subregions: Caribbean, Amazonian, Chacoan, and Parana. The South American transition zone comprises five provinces: North Andean Paramo, Coastal Peruvian Desert, Puna, Atacama, Prepuna, and Monte. The Andean region, which harbors insect taxa with close relatives in the Austral continents, comprises three subregions: Central Chilean, Subantarctic, and Patagonian.
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            • Record: found
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            Biogeographical regionalisation of the Neotropical region

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              Data Leakage and Loss in Biodiversity Informatics

              Abstract The field of biodiversity informatics is in a massive, “grow-out” phase of creating and enabling large-scale biodiversity data resources. Because perhaps 90% of existing biodiversity data nonetheless remains unavailable for science and policy applications, the question arises as to how these existing and available data records can be mobilized most efficiently and effectively. This situation led to our analysis of several large-scale biodiversity datasets regarding birds and plants, detecting information gaps and documenting data “leakage” or attrition, in terms of data on taxon, time, and place, in each data record. We documented significant data leakage in each data dimension in each dataset. That is, significant numbers of data records are lacking crucial information in terms of taxon, time, and/or place; information on place was consistently the least complete, such that geographic referencing presently represents the most significant factor in degradation of usability of information from biodiversity information resources. Although the full process of digital capture, quality control, and enrichment is important to developing a complete digital record of existing biodiversity information, payoffs in terms of immediate data usability will be greatest with attention paid to the georeferencing challenge.
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                Author and article information

                Contributors
                Journal
                Biodivers Data J
                Biodivers Data J
                1
                urn:lsid:arphahub.com:pub:f9b2e808-c883-5f47-b276-6d62129e4ff4
                urn:lsid:zoobank.org:pub:245B00E9-BFE5-4B4F-B76E-15C30BA74C02
                Biodiversity Data Journal
                Pensoft Publishers
                1314-2828
                2019
                20 June 2019
                : 7
                : e36226
                Affiliations
                [1 ] School of Life Sciences, University of Lincoln, Brayford Campus, Lincoln, United Kingdom School of Life Sciences, University of Lincoln, Brayford Campus Lincoln United Kingdom
                [2 ] Department of Micriobiology and Immunology, Montana State Universitiy, Bozeman, United States of America Department of Micriobiology and Immunology, Montana State Universitiy Bozeman United States of America
                [3 ] Departamento de Métodos Cuantitativos, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay Departamento de Métodos Cuantitativos, Facultad de Medicina, Universidad de la República Montevideo Uruguay
                [4 ] Programa para la Conservación de los Murciélagos de Uruguay, Museo Nacional de Historia Natural, Montevideo, Uruguay Programa para la Conservación de los Murciélagos de Uruguay, Museo Nacional de Historia Natural Montevideo Uruguay
                [5 ] Laboratorio de Sistemática e Historia Natural de Vertebrados, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay Laboratorio de Sistemática e Historia Natural de Vertebrados, Facultad de Ciencias, Universidad de la República Montevideo Uruguay
                [6 ] Área Biodiversidad y Conservación, Museo Nacional de Historia Natural, Montevideo, Uruguay Área Biodiversidad y Conservación, Museo Nacional de Historia Natural Montevideo Uruguay
                [7 ] Museo Nacional de Historia Natural, Montevideo, Uruguay Museo Nacional de Historia Natural Montevideo Uruguay
                [8 ] NGO JULANA (Jugando en la Naturaleza), Montevideo, Uruguay NGO JULANA (Jugando en la Naturaleza) Montevideo Uruguay
                [9 ] Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Mississippi, United States of America Department of Wildlife, Fisheries and Aquaculture, Mississippi State University Mississippi United States of America
                [10 ] Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República Montevideo Uruguay
                [11 ] Centro Universitario Regional del Este (CURE), Universidad de la República, Maldonado, Uruguay Centro Universitario Regional del Este (CURE), Universidad de la República Maldonado Uruguay
                [12 ] MacroBiodiversity Lab, School of Science and Technology, Department of Biosciences, Trent University, Nottingham, United Kingdom MacroBiodiversity Lab, School of Science and Technology, Department of Biosciences, Trent University Nottingham United Kingdom
                Author notes
                Corresponding author: Florencia Grattarola ( fgrattarola@ 123456lincoln.ac.uk ).

                Academic editor: Ross Mounce

                Author information
                https://orcid.org/0000-0001-8282-5732
                https://orcid.org/0000-0002-4055-9277
                https://orcid.org/0000-0003-3440-8701
                Article
                36226 11288
                10.3897/BDJ.7.e36226
                6597616
                31274982
                88d4992a-0d8b-44e2-9de2-da9a21f99762
                Florencia Grattarola, Germán Botto, Inés da Rosa, Noelia Gobel, Enrique M. González, Javier González, Daniel Hernández, Gabriel Laufer, Raúl Maneyro, Juan A. Martínez-Lanfranco, Daniel E. Naya, Ana L. Rodales, Lucía Ziegler, Daniel Pincheira-Donoso

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 15 May 2019
                : 14 June 2019
                Page count
                Figures: 4, Tables: 2, References: 60
                Funding
                Funded by: Agencia Nacional de Investigación e Innovación 100008725 http://doi.org/10.13039/100008725
                Categories
                Data Paper (Biosciences)
                Aves
                Reptilia
                Mammalia
                Amphibia
                Biodiversity & Conservation
                Uruguay

                uruguay,biodiversity,species occurrence records,tetrapods, amphibia , reptilia , aves , mammalia

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