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      Packaging and transfer of mitochondrial DNA via exosomes regulate escape from dormancy in hormonal therapy-resistant breast cancer

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          Significance

          Increasing evidence suggests that extracellular vesicles (EVs) can transfer genetic material to recipient cells. However, the mechanism and role of this phenomenon are largely unknown. Here we have made a remarkable discovery: EVs can harbor the full mitochondrial genome. These extracellular vesicles can in turn transfer their mtDNA to cells with impaired metabolism, leading to restoration of metabolic activity. We determined that hormonal therapy induces oxidative phosphorylation-deficient breast cancer cells, which can be rescued via the transfer of mtDNA-laden extracellular vesicles. Horizontal transfer of mtDNA occurred in cancer stem-like cells and was associated with increased self-renewal potential of these cells, leading to resistance to hormonal therapy. We propose that mtDNA transfer occurs in human cancer via EVs.

          Abstract

          The horizontal transfer of mtDNA and its role in mediating resistance to therapy and an exit from dormancy have never been investigated. Here we identified the full mitochondrial genome in circulating extracellular vesicles (EVs) from patients with hormonal therapy-resistant (HTR) metastatic breast cancer. We generated xenograft models of HTR metastatic disease characterized by EVs in the peripheral circulation containing mtDNA. Moreover, these human HTR cells had acquired host-derived (murine) mtDNA promoting estrogen receptor-independent oxidative phosphorylation (OXPHOS). Functional studies identified cancer-associated fibroblast (CAF)-derived EVs (from patients and xenograft models) laden with whole genomic mtDNA as a mediator of this phenotype. Specifically, the treatment of hormone therapy (HT)-naive cells or HT-treated metabolically dormant populations with CAF-derived mtDNA hi EVs promoted an escape from metabolic quiescence and HTR disease both in vitro and in vivo. Moreover, this phenotype was associated with the acquisition of EV mtDNA, especially in cancer stem-like cells, expression of EV mtRNA, and restoration of OXPHOS. In summary, we have demonstrated that the horizontal transfer of mtDNA from EVs acts as an oncogenic signal promoting an exit from dormancy of therapy-induced cancer stem-like cells and leading to endocrine therapy resistance in OXPHOS-dependent breast cancer.

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          Most cited references38

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          Identification of double-stranded genomic DNA spanning all chromosomes with mutated KRAS and p53 DNA in the serum exosomes of patients with pancreatic cancer.

          Exosomes are small vesicles (50-150 nm) of endocytic origin that are released by many different cell types. Exosomes in the tumor microenvironment may play a key role in facilitating cell-cell communication. Exosomes are reported to predominantly contain RNA and proteins. In this study, we investigated whether exosomes from pancreatic cancer cells and serum from patients with pancreatic ductal adenocarcinoma contain genomic DNA. Our results provide evidence that exosomes contain >10-kb fragments of double-stranded genomic DNA. Mutations in KRAS and p53 can be detected using genomic DNA from exosomes derived from pancreatic cancer cell lines and serum from patients with pancreatic cancer. In addition, using whole genome sequencing, we demonstrate that serum exosomes from patients with pancreatic cancer contain genomic DNA spanning all chromosomes. These results indicate that serum-derived exosomes can be used to determine genomic DNA mutations for cancer prediction, treatment, and therapy resistance.
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            Mitochondria and Cancer.

            Decades ago, Otto Warburg observed that cancers ferment glucose in the presence of oxygen, suggesting that defects in mitochondrial respiration may be the underlying cause of cancer. We now know that the genetic events that drive aberrant cancer cell proliferation also alter biochemical metabolism, including promoting aerobic glycolysis, but do not typically impair mitochondrial function. Mitochondria supply energy; provide building blocks for new cells; and control redox homeostasis, oncogenic signaling, innate immunity, and apoptosis. Indeed, mitochondrial biogenesis and quality control are often upregulated in cancers. While some cancers have mutations in nuclear-encoded mitochondrial tricarboxylic acid (TCA) cycle enzymes that produce oncogenic metabolites, there is negative selection for pathogenic mitochondrial genome mutations. Eliminating mtDNA limits tumorigenesis, and rare human tumors with mutant mitochondrial genomes are relatively benign. Thus, mitochondria play a central and multifunctional role in malignant tumor progression, and targeting mitochondria provides therapeutic opportunities.
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              Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation.

              Two human cell lines (termed rho 0), which had been completely depleted of mitochondrial DNA (mtDNA) by long-term exposure to ethidium bromide, were found to be dependent on uridine and pyruvate for growth because of the absence of a functional respiratory chain. Loss of either of these two metabolic requirements was used as a selectable marker for the repopulation of rho 0 cells with exogenous mitochondria by complementation. Transformants obtained with various mitochondrial donors exhibited a respiratory phenotype that was in most cases distinct from that of the rho 0 parent or the donor, indicating that the genotypes of the mitochondrial and nuclear genomes as well as their specific interactions play a role in the respiratory competence of a cell.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc. Natl. Acad. Sci. U.S.A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                24 October 2017
                11 October 2017
                11 October 2017
                : 114
                : 43
                : E9066-E9075
                Affiliations
                [1] aDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10021;
                [2] bChildren’s Cancer and Blood Foundation Laboratories, Weill Cornell Medicine, New York, NY 10065;
                [3] cDepartment of Experimental, Diagnostic and Specialty Medicine, Policlinico Universitario Sant’ Orsola-Malpighi, 40138 Bologna BO, Italy;
                [4] dCenter for Applied Biomedical Research Laboratory, Policlinico Universitario Sant’ Orsola-Malpighi, Bologna, 40138, Italy;
                [5] eDepartment of Medical and Surgical Sciences, Università di Bologna, Bologna, 40138, Italy;
                [6] fDepartment of Biological, Geological and Environmental Science, Università di Bologna, Bologna, 40138, Italy;
                [7] gSchool of Biological Sciences, Queens University Belfast, Belfast BT9 7BL, United Kingdom;
                [8] hDepartment of Pharmacy and Biotechnology Alma Mater Studiorum, Università di Bologna, Bologna, 40138, Italy;
                [9] iFeil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, NY 10065;
                [10] jDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY 10065;
                [11] kElectron Microscopy Resource Center, The Rockefeller University, New York, NY 10065;
                [12] lDepartment of Medicine, Weill Cornell Medicine, New York, NY 10065
                Author notes

                Edited by Gregg L. Semenza, Johns Hopkins University School of Medicine, Baltimore, MD, and approved September 1, 2017 (received for review March 24, 2017)

                Author contributions: P.S. conceived the study and designed research; P.S., C.S., I.K., Q.C., L.B.A., A. Stepanova, L.I., C.M., A.G., and B.K.T. performed research; A. Strillacci, N.S., and K.U. contributed new reagents/analytic tools; P.S., C.S., I.K., L.D., A.G., A.H., L.N., M.B., M.C., G.G., D.L., and J.B. analyzed data; and P.S., G.G., D.L., and J.B. wrote the paper.

                2Present address: Pediatric Clinic III, University Clinic of Essen, Essen 45147, Germany.

                Author information
                http://orcid.org/0000-0001-5962-8351
                Article
                201704862
                10.1073/pnas.1704862114
                5664494
                29073103
                8944525d-4fec-4b86-a5c7-f74ddd9ce88e

                Freely available online through the PNAS open access option.

                History
                Page count
                Pages: 10
                Funding
                Funded by: DOD | United States Army | MEDCOM | Congressionally Directed Medical Research Programs (CDMRP) 100000090
                Award ID: W81XWH-10-1-1013
                Funded by: National Institues of Health
                Award ID: R01: CA87637
                Categories
                PNAS Plus
                Biological Sciences
                Medical Sciences
                PNAS Plus

                exosomes,mitochondrial dna,cancer stem cells,hormonal therapy,metastasis

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