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      Oncometabolites: tailoring our genes

      research-article
      ,
      The Febs Journal
      John Wiley & Sons, Ltd
      cancer, dioxygenase, epigenetics, metabolism, oncometabolites

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          Abstract

          Increased glucose metabolism in cancer cells is a phenomenon that has been known for over 90 years, allowing maximal cell growth through faster ATP production and redistribution of carbons towards nucleotide, protein and fatty acid synthesis. Recently, metabolites that can promote tumorigeneis by altering the epigenome have been identified. These ‘oncometabolites’ include the tricarboxylic acid cycle metabolites succinate and fumarate, whose levels are elevated in rare tumours with succinate dehydrogenase and fumarate hydratase mutations, respectively. 2-Hydroxyglutarate is another oncometabolite; it is produced de novo as a result of the mutation of isocitrate dehydrogenase, and is commonly found in gliomas and acute myeloid leukaemia. Interestingly, the structural similarity of these oncometabolites to their precursor metabolite, α-ketoglutarate, explains the tumorigenic potential of these metabolites, by competitive inhibition of a superfamily of enzymes called the α-ketoglutarate-dependent dioxygenases. These enzymes utilize α-ketoglutarate as a cosubstrate, and are involved in fatty acid metabolism, oxygen sensing, collagen biosynthesis, and modulation of the epigenome. They include enzymes that are involved in regulating gene expression via DNA and histone tail demethylation. In this review, we will focus on the link between metabolism and epigenetics, and how we may target oncometabolite-induced tumorigenesis in the future.

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          Most cited references37

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          On the origin of cancer cells.

          O WARBURG (1956)
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            Hypomethylation distinguishes genes of some human cancers from their normal counterparts.

            It has been suggested that cancer represents an alteration in DNA, heritable by progeny cells, that leads to abnormally regulated expression of normal cellular genes; DNA alterations such as mutations, rearrangements and changes in methylation have been proposed to have such a role. Because of increasing evidence that DNA methylation is important in gene expression (for review see refs 7, 9-11), several investigators have studied DNA methylation in animal tumours, transformed cells and leukaemia cells in culture. The results of these studies have varied; depending on the techniques and systems used, an increase, decrease, or no change in the degree of methylation has been reported. To our knowledge, however, primary human tumour tissues have not been used in such studies. We have now examined DNA methylation in human cancer with three considerations in mind: (1) the methylation pattern of specific genes, rather than total levels of methylation, was determined; (2) human cancers and adjacent analogous normal tissues, unconditioned by culture media, were analysed; and (3) the cancers were taken from patients who had received neither radiation nor chemotherapy. In four of five patients studied, representing two histological types of cancer, substantial hypomethylation was found in genes of cancer cells compared with their normal counterparts. This hypomethylation was progressive in a metastasis from one of the patients.
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              Charting histone modifications and the functional organization of mammalian genomes.

              A succession of technological advances over the past decade have enabled researchers to chart maps of histone modifications and related chromatin structures with increasing accuracy, comprehensiveness and throughput. The resulting data sets highlight the interplay between chromatin and genome function, dynamic variations in chromatin structure across cellular conditions, and emerging roles for large-scale domains and higher-ordered chromatin organization. Here we review a selection of recent studies that have probed histone modifications and successive layers of chromatin structure in mammalian genomes, the patterns that have been identified and future directions for research.
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                Author and article information

                Journal
                FEBS J
                FEBS J
                febs
                The Febs Journal
                John Wiley & Sons, Ltd (Chichester, UK )
                1742-464X
                1742-4658
                August 2015
                30 April 2015
                : 282
                : 15
                : 2796-2805
                Affiliations
                Cancer Research UK, Beatson Institute Glasgow, UK
                Author notes
                Correspondence E. Gottlieb, Cancer Research UK, Beatson Institute, Switchback Road, Glasgow, G61 1BD, UK, Fax: +44 141 942 6521, Tel: +44 141 330 3981, E-mail: e.gottlieb@ 123456beatson.gla.ac.uk
                Article
                10.1111/febs.13295
                4676302
                25864878
                8a9d367a-cd19-4837-b66e-07f9a49d65e9
                © 2015 The Authors. FEBS Journal published by John Wiley & Sons Ltd on behalf of FEBS.

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 02 February 2015
                : 14 March 2015
                : 06 April 2015
                Categories
                State-of-the-Art Review

                Molecular biology
                cancer,dioxygenase,epigenetics,metabolism,oncometabolites
                Molecular biology
                cancer, dioxygenase, epigenetics, metabolism, oncometabolites

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