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      Computational Molecular Docking and X-ray Crystallographic Studies of Catechins in New Drug Design Strategies

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          Abstract

          Epidemiological and laboratory studies have shown that green tea and green tea catechins exert beneficial effects on a variety of diseases, including cancer, metabolic syndrome, infectious diseases, and neurodegenerative diseases. In most cases, (−)-epigallocatechin gallate (EGCG) has been shown to play a central role in these effects by green tea. Catechins from other plant sources have also shown health benefits. Many studies have revealed that the binding of EGCG and other catechins to proteins is involved in its action mechanism. Computational docking analysis (CMDA) and X-ray crystallographic analysis (XCA) have provided detailed information on catechin-protein interactions. Several of these studies have revealed that the galloyl moiety anchors it to the cleft of proteins through interactions with its hydroxyl groups, explaining the higher activity of galloylated catechins such as EGCG and epicatechin gallate than non-galloylated catechins. In this paper, we review the results of CMDA and XCA of EGCG and other plant catechins to understand catechin-protein interactions with the expectation of developing new drugs with health-promoting properties.

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          EGCG redirects amyloidogenic polypeptides into unstructured, off-pathway oligomers.

          The accumulation of beta-sheet-rich amyloid fibrils or aggregates is a complex, multistep process that is associated with cellular toxicity in a number of human protein misfolding disorders, including Parkinson's and Alzheimer's diseases. It involves the formation of various transient and intransient, on- and off-pathway aggregate species, whose structure, size and cellular toxicity are largely unclear. Here we demonstrate redirection of amyloid fibril formation through the action of a small molecule, resulting in off-pathway, highly stable oligomers. The polyphenol (-)-epigallocatechin gallate efficiently inhibits the fibrillogenesis of both alpha-synuclein and amyloid-beta by directly binding to the natively unfolded polypeptides and preventing their conversion into toxic, on-pathway aggregation intermediates. Instead of beta-sheet-rich amyloid, the formation of unstructured, nontoxic alpha-synuclein and amyloid-beta oligomers of a new type is promoted, suggesting a generic effect on aggregation pathways in neurodegenerative diseases.
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            Flavonoid-mediated inhibition of SARS coronavirus 3C-like protease expressed in Pichia pastoris

            The 3C-like protease (3CLpro) of severe acute respiratory syndrome associated coronavirus (SARS-CoV) is vital for SARS-CoV replication and is a promising drug target. Recombinant 3CLpro was expressed in Pichia pastoris GS115 as a 42 kDa protein that displayed a K m of 15 ± 2 μM with Dabcyl-KTSAVLQSGFRKME-Edans as substrate. Purified 3CLpro was used for inhibition and kinetic assays with seven flavonoid compounds. The IC50 of six flavonoid compounds were 47–381 μM. Quercetin, epigallocatechin gallate and gallocatechin gallate (GCG) displayed good inhibition toward 3CLpro with IC50 values of 73, 73 and 47 μM, respectively. GCG showed a competitive inhibition pattern with K i value of 25 ± 1.7 μM. In molecular docking experiments, GCG displayed a binding energy of −14 kcal mol−1 to the active site of 3CLpro and the galloyl moiety at 3-OH position was required for 3CLpro inhibition activity. Electronic supplementary material The online version of this article (doi:10.1007/s10529-011-0845-8) contains supplementary material, which is available to authorized users.
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              Why drinking green tea could prevent cancer.

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                Author and article information

                Journal
                Molecules
                Molecules
                molecules
                Molecules : A Journal of Synthetic Chemistry and Natural Product Chemistry
                MDPI
                1420-3049
                13 August 2018
                August 2018
                : 23
                : 8
                : 2020
                Affiliations
                [1 ]School of Food and Nutritional Sciences, Shizuoka University, Yada, Shizuoka 422-8526, Japan; snakano@ 123456u-shizuoka-ken.ac.jp (S.N.); yori.naka222@ 123456u-shizuoka-ken.ac.jp (Y.N.); itosohei@ 123456u-shizuoka-ken.ac.jp (S.I.)
                [2 ]Biological Science Research, Kao Corporation, Ichikai-machi, Haga-gun, Tochigi 321-3497, Japan; meguro.shinichi@ 123456kao.com
                [3 ]Research and Development, Core Technology, Kao Corporation, Sumida, Tokyo 131-8501, Japan; hase.tadashi@ 123456kao.com
                [4 ]Faculty of Education, Art and Science, Yamagata University, Yamagata 990-8560, Japan; taksuzuk@ 123456e.yamagata-u.ac.jp
                Author notes
                [* ]Correspondence: isemura@ 123456u-shizuoka-ken.ac.jp ; Tel.: +81-54-264-5822
                Article
                molecules-23-02020
                10.3390/molecules23082020
                6222539
                30104534
                8ab39ff7-1175-4bdb-8713-69cfd6f3ac9f
                © 2018 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 24 July 2018
                : 11 August 2018
                Categories
                Review

                green tea catechins,egcg,x-ray crystallographic analysis,computational molecular docking analysis

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