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      Iron-dependent mutualism between Chlorella sorokiniana and Ralstonia pickettii forms the basis for a sustainable bioremediation system

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          Abstract

          Phototrophic communities of autotrophic microalgae and heterotrophic bacteria perform complex tasks of nutrient acquisition and tackling environmental stress but remain underexplored as a basis for the bioremediation of emerging pollutants. In industrial monoculture designs, poor iron uptake by microalgae limits their productivity and biotechnological efficacy. Iron supplementation is expensive and ineffective because iron remains insoluble in an aqueous medium and is biologically unavailable. However, microalgae develop complex interkingdom associations with siderophore-producing bacteria that help solubilize iron and increase its bioavailability. Using dye degradation as a model, we combined environmental isolations and synthetic ecology as a workflow to design a simplified microbial community based on iron and carbon exchange. We established a mutualism between the previously non-associated alga Chlorella sorokiniana and siderophore-producing bacterium Ralstonia pickettii. Siderophore-mediated increase in iron bioavailability alleviated Fe stress for algae and increased the reductive iron uptake mechanism and bioremediation potential. In exchange, C. sorokiniana produced galactose, glucose, and mannose as major extracellular monosaccharides, supporting bacterial growth. We propose that extracellular iron reduction by ferrireductase is crucial for azoreductase-mediated dye degradation in microalgae. These results demonstrate that iron bioavailability, often overlooked in cultivation, governs microalgal growth, enzymatic processes, and bioremediation potential. Our results suggest that phototrophic communities with an active association for iron and carbon exchange have the potential to overcome challenges associated with micronutrient availability, while scaling up bioremediation designs.

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          U1 snRNP regulates cancer cell migration and invasion in vitro

          Stimulated cells and cancer cells have widespread shortening of mRNA 3’-untranslated regions (3’UTRs) and switches to shorter mRNA isoforms due to usage of more proximal polyadenylation signals (PASs) in introns and last exons. U1 snRNP (U1), vertebrates’ most abundant non-coding (spliceosomal) small nuclear RNA, silences proximal PASs and its inhibition with antisense morpholino oligonucleotides (U1 AMO) triggers widespread premature transcription termination and mRNA shortening. Here we show that low U1 AMO doses increase cancer cells’ migration and invasion in vitro by up to 500%, whereas U1 over-expression has the opposite effect. In addition to 3’UTR length, numerous transcriptome changes that could contribute to this phenotype are observed, including alternative splicing, and mRNA expression levels of proto-oncogenes and tumor suppressors. These findings reveal an unexpected role for U1 homeostasis (available U1 relative to transcription) in oncogenic and activated cell states, and suggest U1 as a potential target for their modulation.
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            Universal chemical assay for the detection and determination of siderophores

            A universal method to detect and determine siderophores was developed by using their high affinity for iron(III). The ternary complex chrome azurol S/iron(III)/hexadecyltrimethylammonium bromide, with an extinction coefficient of approximately 100,000 M-1 cm-1 at 630 nm, serves as an indicator. When a strong chelator removes the iron from the dye, its color turns from blue to orange. Because of the high sensitivity, determination of siderophores in solution and their characterization by paper electrophoresis chromatography can be performed directly on supernatants of culture fluids. The method is also applicable to agar plates. Orange halos around the colonies on blue agar are indicative of siderophore excretion. It was demonstrated with Escherichia coli strains that biosynthetic, transport, and regulatory mutations in the enterobactin system are clearly distinguishable. The method was successfully used to screen mutants in the iron uptake system of two Rhizobium meliloti strains, DM5 and 1021.
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              Siderophore-based iron acquisition and pathogen control.

              High-affinity iron acquisition is mediated by siderophore-dependent pathways in the majority of pathogenic and nonpathogenic bacteria and fungi. Considerable progress has been made in characterizing and understanding mechanisms of siderophore synthesis, secretion, iron scavenging, and siderophore-delivered iron uptake and its release. The regulation of siderophore pathways reveals multilayer networks at the transcriptional and posttranscriptional levels. Due to the key role of many siderophores during virulence, coevolution led to sophisticated strategies of siderophore neutralization by mammals and (re)utilization by bacterial pathogens. Surprisingly, hosts also developed essential siderophore-based iron delivery and cell conversion pathways, which are of interest for diagnostic and therapeutic studies. In the last decades, natural and synthetic compounds have gained attention as potential therapeutics for iron-dependent treatment of infections and further diseases. Promising results for pathogen inhibition were obtained with various siderophore-antibiotic conjugates acting as "Trojan horse" toxins and siderophore pathway inhibitors. In this article, general aspects of siderophore-mediated iron acquisition, recent findings regarding iron-related pathogen-host interactions, and current strategies for iron-dependent pathogen control will be reviewed. Further concepts including the inhibition of novel siderophore pathway targets are discussed.
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                Author and article information

                Contributors
                brenda.parker@ucl.ac.uk
                rads26@hotmail.com
                mistletoe_h@hotmail.com
                Journal
                ISME COMMUN.
                ISME Communications
                Nature Publishing Group UK (London )
                2730-6151
                15 September 2022
                15 September 2022
                2022
                : 2
                : 1
                : 83
                Affiliations
                [1 ]GRID grid.8195.5, ISNI 0000 0001 2109 4999, Bioresources & Environmental Biotechnology Laboratory, Department of Environmental Studies, , University of Delhi, ; Delhi, 110007 India
                [2 ]GRID grid.83440.3b, ISNI 0000000121901201, Department of Biochemical Engineering, Bernard Katz Building, , University College London, ; Gower Street, London, WC1E 6BT UK
                [3 ]GRID grid.8195.5, ISNI 0000 0001 2109 4999, Department of Environmental Studies, Janki Devi Memorial College, , University of Delhi, ; Delhi, 110060 India
                [4 ]GRID grid.8195.5, ISNI 0000 0001 2109 4999, Delhi School of Climate Change & Sustainability, Institute of Eminence, , University of Delhi, ; Delhi, 110007 India
                [5 ]GRID grid.8195.5, ISNI 0000 0001 2109 4999, Centre for Interdisciplinary Studies on Mountain & Hill Environment, , University of Delhi, ; Delhi, 110007 India
                Author information
                http://orcid.org/0000-0003-3218-066X
                http://orcid.org/0000-0002-4869-9637
                http://orcid.org/0000-0003-1397-9230
                http://orcid.org/0000-0002-8173-9207
                Article
                161
                10.1038/s43705-022-00161-0
                9476460
                8ce1c8ee-3151-4625-9279-13951bc2e1d2
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 9 October 2021
                : 15 June 2022
                : 14 July 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/100011904, British Phycological Society (BPS);
                Award ID: 2021_BPS_0039
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/100010897, Newton Fund;
                Award ID: 345775672
                Award Recipient :
                Categories
                Article
                Custom metadata
                © The Author(s) 2022

                environmental sciences,microbial ecology
                environmental sciences, microbial ecology

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