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      Electron Transfer Function versus Oxygen Delivery: A Comparative Study for Several Hexacoordinated Globins Across the Animal Kingdom

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          Abstract

          Caenorhabditis elegans globin GLB-26 (expressed from gene T22C1.2) has been studied in comparison with human neuroglobin (Ngb) and cytoglobin (Cygb) for its electron transfer properties. GLB-26 exhibits no reversible binding for O 2 and a relatively low CO affinity compared to myoglobin-like globins. These differences arise from its mechanism of gaseous ligand binding since the heme iron of GLB-26 is strongly hexacoordinated in the absence of external ligands; the replacement of this internal ligand, probably the E7 distal histidine, is required before binding of CO or O 2 as for Ngb and Cygb. Interestingly the ferrous bis-histidyl GLB-26 and Ngb, another strongly hexacoordinated globin, can transfer an electron to cytochrome c (Cyt-c) at a high bimolecular rate, comparable to those of inter-protein electron transfer in mitochondria. In addition, GLB-26 displays an unexpectedly rapid oxidation of the ferrous His-Fe-His complex without O 2 actually binding to the iron atom, since the heme is oxidized by O 2 faster than the time for distal histidine dissociation. These efficient mechanisms for electron transfer could indicate a family of hexacoordinated globin which are functionally different from that of pentacoordinated globins.

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          Most cited references69

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          PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization.

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            Neurons detect increases and decreases in oxygen levels using distinct guanylate cyclases.

            Homeostatic sensory systems detect small deviations in temperature, water balance, pH, and energy needs to regulate adaptive behavior and physiology. In C. elegans, a homeostatic preference for intermediate oxygen (O2) levels requires cGMP signaling through soluble guanylate cyclases (sGCs), proteins that bind gases through an associated heme group. Here we use behavioral analysis, functional imaging, and genetics to show that reciprocal changes in O2 levels are encoded by sensory neurons that express alternative sets of sGCs. URX sensory neurons are activated by increases in O2 levels, and require the sGCs gcy-35 and gcy-36. BAG sensory neurons are activated by decreases in O2 levels, and require the sGCs gcy-31 and gcy-33. The sGCs are instructive O2 sensors, as forced expression of URX sGC genes causes BAG neurons to detect O2 increases. Both sGC expression and cell-intrinsic dynamics contribute to the differential roles of URX and BAG in O2-dependent behaviors.
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              Quantitative analysis of protein far UV circular dichroism spectra by neural networks.

              A new method based on neural network theory is presented to analyze and quantify the information content of far UV circular dichroism spectra. Using a backpropagation network model with a single hidden layer between input and output, it was possible to deduce five different secondary structure fractions (helix, parallel and antiparallel beta-sheet, beta-turn and random coil) with satisfactory correlations between calculated and measured secondary structure data. We demonstrate that for each wavelength interval a specific network is suitable. The remaining discrepancy between the secondary structure data from neural network prediction and crystallography may be attributed to errors in the determination of protein concentration and random noise in the CD signal, as indicated by simulations.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2011
                1 June 2011
                : 6
                : 6
                : e20478
                Affiliations
                [1 ]INSERM U779, Universities Paris VI and XI, Le Kremlin-Bicêtre, France
                [2 ]Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium
                [3 ]Institute of Physiology and Zürich Center for Integrative Human Physiology (ZIHP), University of Zürich, Zürich, Switzerland
                University of South Florida College of Medicine, United States of America
                Author notes

                Conceived and designed the experiments: LK MCM SD LM. Performed the experiments: LK LT EG. Analyzed the data: LK MCM. Contributed reagents/materials/analysis tools: LK CL LT EG. Wrote the paper: LK MCM. Edited and corrected manuscript: LK MCM SD LM EG CL DH.

                Article
                PONE-D-11-04357
                10.1371/journal.pone.0020478
                3106018
                21674044
                8d4c8fc3-6d2d-4ce2-be3d-718ea80577f8
                Kiger et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
                History
                : 8 March 2011
                : 27 April 2011
                Page count
                Pages: 10
                Categories
                Research Article
                Biology
                Biochemistry
                Proteins
                Hemoproteins
                Recombinant Proteins
                Biomacromolecule-Ligand Interactions
                Biophysics
                Biomacromolecule-Ligand Interactions
                Biophysics Simulations

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                Uncategorized

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