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      Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis

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          Abstract

          Bacteria release membrane vesicles (MVs) that play important roles in various biological processes. However, the mechanisms of MV formation in Gram-positive bacteria are unclear, as these cells possess a single cytoplasmic membrane that is surrounded by a thick cell wall. Here we use live cell imaging and electron cryo-tomography to describe a mechanism for MV formation in Bacillus subtilis. We show that the expression of a prophage-encoded endolysin in a sub-population of cells generates holes in the peptidoglycan cell wall. Through these openings, cytoplasmic membrane material protrudes into the extracellular space and is released as MVs. Due to the loss of membrane integrity, the induced cells eventually die. The vesicle-producing cells induce MV formation in neighboring cells by the enzymatic action of the released endolysin. Our results support the idea that endolysins may be important for MV formation in bacteria, and this mechanism may potentially be useful for the production of MVs for applications in biomedicine and nanotechnology.

          Abstract

          It is unclear how Gram-positive bacteria, with a thick cell wall, can release membrane vesicles. Here, Toyofuku et al. show that a prophage-encoded endolysin can generate holes in the cell wall through which cytoplasmic membrane material protrudes and is released as vesicles.

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          Most cited references40

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          Explosive cell lysis as a mechanism for the biogenesis of bacterial membrane vesicles and biofilms

          Many bacteria produce extracellular and surface-associated components such as membrane vesicles (MVs), extracellular DNA and moonlighting cytosolic proteins for which the biogenesis and export pathways are not fully understood. Here we show that the explosive cell lysis of a sub-population of cells accounts for the liberation of cytosolic content in Pseudomonas aeruginosa biofilms. Super-resolution microscopy reveals that explosive cell lysis also produces shattered membrane fragments that rapidly form MVs. A prophage endolysin encoded within the R- and F-pyocin gene cluster is essential for explosive cell lysis. Endolysin-deficient mutants are defective in MV production and biofilm development, consistent with a crucial role in the biogenesis of MVs and liberation of extracellular DNA and other biofilm matrix components. Our findings reveal that explosive cell lysis, mediated through the activity of a cryptic prophage endolysin, acts as a mechanism for the production of bacterial MVs.
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            In Situ probing of newly synthesized peptidoglycan in live bacteria with fluorescent D-amino acids.

            Tracking a bug's life: Peptidoglycan (PG) of diverse bacteria is labeled by exploiting the tolerance of cells for incorporating different non-natural D-amino acids. These nontoxic D-amino acids preferably label the sites of active PG synthesis, thereby enabling fine spatiotemporal tracking of cell-wall dynamics in phylogenetically and morphologically diverse bacteria. HCC = 7-hydroxycoumarin, NBD = 7-nitrobenzofurazan, TAMRA = carboxytetramethylrhodamine. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
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              Volta potential phase plate for in-focus phase contrast transmission electron microscopy.

              We describe a phase plate for transmission electron microscopy taking advantage of a hitherto-unknown phenomenon, namely a beam-induced Volta potential on the surface of a continuous thin film. The Volta potential is negative, indicating that it is not caused by beam-induced electrostatic charging. The film must be heated to ∼ 200 °C to prevent contamination and enable the Volta potential effect. The phase shift is created "on the fly" by the central diffraction beam eliminating the need for precise phase plate alignment. Images acquired with the Volta phase plate (VPP) show higher contrast and unlike Zernike phase plate images no fringing artifacts. Following installation into the microscope, the VPP has an initial settling time of about a week after which the phase shift behavior becomes stable. The VPP has a long service life and has been used for more than 6 mo without noticeable degradation in performance. The mechanism underlying the VPP is the same as the one responsible for the degradation over time of the performance of thin-film Zernike phase plates, but in the VPP it is used in a constructive way. The exact physics and/or chemistry behind the process causing the Volta potential are not fully understood, but experimental evidence suggests that radiation-induced surface modification combined with a chemical equilibrium between the surface and residual gases in the vacuum play an important role.
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                Author and article information

                Contributors
                toyofuku.masanori.gf@u.tsukuba.ac.jp
                pilhofer@biol.ethz.ch
                leberl@botinst.uzh.ch
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                7 September 2017
                7 September 2017
                2017
                : 8
                : 481
                Affiliations
                [1 ]ISNI 0000 0001 2369 4728, GRID grid.20515.33, Department of Life and Environmental Sciences, , University of Tsukuba, ; Tennoudai 1-1-1, Tsukuba, Ibaraki 305-8572 Japan
                [2 ]ISNI 0000 0004 1937 0650, GRID grid.7400.3, Department of Plant and Microbial Biology, , University of Zürich, ; Zollikerstrasse 107, Zürich, 8008 Switzerland
                [3 ]ISNI 0000 0001 2156 2780, GRID grid.5801.c, Department of Biology, , Institute of Molecular Biology and Biophysics, ; ETH Zürich, Otto-Stern-Weg 5, Zürich, 8093 Switzerland
                [4 ]ISNI 0000 0004 1937 0650, GRID grid.7400.3, Department of Chemistry, , University of Zürich, ; Winterthurerstrasse 190, Zürich, 8057 Switzerland
                [5 ]ISNI 0000 0001 2341 2786, GRID grid.116068.8, Present Address: Department of Biological Engineering, , Massachusetts Institute of Technology, ; Cambridge, MA 02139 USA
                Author information
                http://orcid.org/0000-0003-3053-0689
                http://orcid.org/0000-0002-7241-0864
                Article
                492
                10.1038/s41467-017-00492-w
                5589764
                28883390
                8dce23b2-834f-4302-ba13-e12f6bd1a25c
                © The Author(s) 2017

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 5 October 2016
                : 3 July 2017
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