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      Species Delimitation--a Geneious plugin for the exploration of species boundaries.

      Molecular Ecology Resources

      Computer Simulation, Genetics, Population, instrumentation, methods, Phylogeny, Probability, Software, Species Specificity

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          Abstract

          Species Delimitation is a plugin to the Geneious software to support the exploration of species boundaries in a gene tree. The user assigns taxa to putative species and the plugin computes statistics relating to the probability of the observed monophyly or exclusivity having occurred by chance in a coalescent process. It also assesses the within and between species genetic distances to infer the probability with which members of a putative species might be identified successfully with tree-based methods. © 2010 Blackwell Publishing Ltd.

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          Journal
          21429114
          10.1111/j.1755-0998.2010.02896.x

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