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      Structure-Guided Design of Selective Epac1 and Epac2 Agonists

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          Abstract

          The second messenger cAMP is known to augment glucose-induced insulin secretion. However, its downstream targets in pancreatic β-cells have not been unequivocally determined. Therefore, we designed cAMP analogues by a structure-guided approach that act as Epac2-selective agonists both in vitro and in vivo. These analogues activate Epac2 about two orders of magnitude more potently than cAMP. The high potency arises from increased affinity as well as increased maximal activation. Crystallographic studies demonstrate that this is due to unique interactions. At least one of the Epac2-specific agonists, Sp-8-BnT-cAMPS (S-220), enhances glucose-induced insulin secretion in human pancreatic cells. Selective targeting of Epac2 is thus proven possible and may be an option in diabetes treatment.

          Author Summary

          cAMP is a small molecule produced by cells that activates proteins involved in a wide range of biological processes, including olfaction, pacemaker activity, regulation of gene expression, insulin secretion, and many others. In the case of insulin secretion, cAMP seems to impinge on different stages of the signalling cascade to regulate secretory activity in pancreatic β-cells. Here we have developed a chemically modified version of cAMP that specifically only activates Epac2, one of the cAMP-responsive proteins in this cascade. Furthermore, our cAMP analogue activates Epac2 more potently than cAMP itself does. We have determined several crystal structures of Epac2 in complex with cAMP analogues to help us explain the molecular basis of the observed selectivity and the strong activation potential. In addition, we were able to show that the analogue is able to potentiate glucose-induced secretion of insulin from human pancreatic islets. The principal challenge during this study was identifying and understanding small differences in the cAMP-binding domains of cAMP-regulated proteins and matching these differences with suitable modifications of the cAMP molecule.

          Abstract

          A newly developed analogue of cAMP that selectively activates Epac2 can potentiate glucose-induced insulin secretion from human pancreatic β-cells.

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          Most cited references42

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          Reconstitution of IKATP: an inward rectifier subunit plus the sulfonylurea receptor.

          A member of the inwardly rectifying potassium channel family was cloned here. The channel, called BIR (Kir6.2), was expressed in large amounts in rat pancreatic islets and glucose-responsive insulin-secreting cell lines. Coexpression with the sulfonylurea receptor SUR reconstituted an inwardly rectifying potassium conductance of 76 picosiemens that was sensitive to adenosine triphosphate (ATP) (IKATP) and was inhibited by sulfonylureas and activated by diazoxide. The data indicate that these pancreatic beta cell potassium channels are a complex composed of at least two subunits--BIR, a member of the inward rectifier potassium channel family, and SUR, a member of the ATP-binding cassette superfamily. Gene mapping data show that these two potassium channel subunit genes are clustered on human chromosome 11 at position 11p15.1.
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            Mechanisms of action of glucagon-like peptide 1 in the pancreas.

            Glucagon-like peptide 1 (GLP-1) is a hormone that is encoded in the proglucagon gene. It is mainly produced in enteroendocrine L cells of the gut and is secreted into the blood stream when food containing fat, protein hydrolysate, and/or glucose enters the duodenum. Its particular effects on insulin and glucagon secretion have generated a flurry of research activity over the past 20 years culminating in a naturally occurring GLP-1 receptor (GLP-1R) agonist, exendin 4 (Ex-4), now being used to treat type 2 diabetes mellitus (T2DM). GLP-1 engages a specific guanine nucleotide-binding protein (G-protein) coupled receptor (GPCR) that is present in tissues other than the pancreas (brain, kidney, lung, heart, and major blood vessels). The most widely studied cell activated by GLP-1 is the insulin-secreting beta cell where its defining action is augmentation of glucose-induced insulin secretion. Upon GLP-1R activation, adenylyl cyclase (AC) is activated and cAMP is generated, leading, in turn, to cAMP-dependent activation of second messenger pathways, such as the protein kinase A (PKA) and Epac pathways. As well as short-term effects of enhancing glucose-induced insulin secretion, continuous GLP-1R activation also increases insulin synthesis, beta cell proliferation, and neogenesis. Although these latter effects cannot be currently monitored in humans, there are substantial improvements in glucose tolerance and increases in both first phase and plateau phase insulin secretory responses in T2DM patients treated with Ex-4. This review will focus on the effects resulting from GLP-1R activation in the pancreas.
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              Structural basis for modulation and agonist specificity of HCN pacemaker channels.

              The family of hyperpolarization-activated, cyclic nucleotide-modulated (HCN) channels are crucial for a range of electrical signalling, including cardiac and neuronal pacemaker activity, setting resting membrane electrical properties and dendritic integration. These nonselective cation channels, underlying the I(f), I(h) and I(q) currents of heart and nerve cells, are activated by membrane hyperpolarization and modulated by the binding of cyclic nucleotides such as cAMP and cGMP. The cAMP-mediated enhancement of channel activity is largely responsible for the increase in heart rate caused by beta-adrenergic agonists. Here we have investigated the mechanism underlying this modulation by studying a carboxy-terminal fragment of HCN2 containing the cyclic nucleotide-binding domain (CNBD) and the C-linker region that connects the CNBD to the pore. X-ray crystallographic structures of this C-terminal fragment bound to cAMP or cGMP, together with equilibrium sedimentation analysis, identify a tetramerization domain and the mechanism for cyclic nucleotide specificity, and suggest a model for ligand-dependent channel modulation. On the basis of amino acid sequence similarity to HCN channels, the cyclic nucleotide-gated, and eag- and KAT1-related families of channels are probably related to HCN channels in structure and mechanism.
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                Author and article information

                Contributors
                Role: Academic Editor
                Journal
                PLoS Biol
                PLoS Biol
                plos
                plosbiol
                PLoS Biology
                Public Library of Science (San Francisco, CA USA )
                1544-9173
                1545-7885
                January 2015
                20 January 2015
                : 13
                : 1
                : e1002038
                Affiliations
                [1 ]BIOLOG Life Science Institute, Bremen, Germany
                [2 ]Department of Biochemistry, University of Kassel, Kassel, Germany
                [3 ]Galapagos BV, CR Leiden, The Netherlands
                [4 ]Department of Chemistry, Laboratory of Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands
                [5 ]Department of Chemistry, NMR Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, The Netherlands
                [6 ]Department of Nephrology, Leiden University Medical Center, Leiden, The Netherlands
                [7 ]Hubrecht Institute/KNAW and University Medical Center Utrecht, Utrecht, The Netherlands
                [8 ]Molecular Cancer Research and Cancer Genomics Netherlands, Center for Molecular Medicine, UMC Utrecht, Utrecht, The Netherlands
                Brandeis University, UNITED STATES
                Author notes

                F.S. is an employee and H.-G.G. is the CEO of BIOLOG LSI, and C.N.L and R.A.J.J. are employees of Galapagos, BV.

                Conceived and designed the experiments: FS HR. Performed the experiments: FS DB CNL JHE MAH HR HW. Analyzed the data: FS DB CLHR FWH H-GG RAJ HW HR. Contributed reagents/materials/analysis tools: JHE EJPK. Wrote the paper: FS HR. Synthesized cAMP analogues: FS. Performed the in vitro PKA activation assays: DB. Performed the insulin secretion assays: CNL JHE. Prepared and contributed human pancreas: JHE EJPK. Collected X-ray diffraction data: MAH. Performed and analyzed NMR experiments: HW. Wrote grants: JLB.

                [¤]

                Current address: Department of Medical Oncology, University Medical Center Utrecht, Utrecht, The Netherlands

                Article
                PBIOLOGY-D-14-01654
                10.1371/journal.pbio.1002038
                4300089
                25603503
                90a96e91-6867-46e4-bb64-d7d73400ea77
                Copyright @ 2015

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

                History
                : 11 May 2014
                : 3 December 2014
                Page count
                Figures: 6, Tables: 2, Pages: 26
                Funding
                H.R. was supported by a veni grant from the Netherlands Organisation for Scientific Research (NWO), by a Otto-Hahn-Medaille of the Max-Planck-Gesellschaft and the Hendrik Casimir-Karl Ziegler-Forschungspreis of the Nordrhein-Westfälischen Akademie der Wissenschaften and the Koninklijke Nederlandse Akademie van Wetenschappen. J.L.B. acknowledges the support of NWO (CW-Top-subsidie 700.59.302). F.W.H. acknowledges the support of the Federal Ministry of Education and Research Project (FKZ 0316177F, No Pain) and the European Union (EU) FP7 collaborative project Affinomics (Contract No. 241481). This work was partially funded by Top Institute Pharma (TI-Pharma) (J.L.B. and R.A.J.J.). This work was partially funded by the “Diabetes Cell Therapy Initiative” (DCTI) consortium (R.A.J.J. and E.J.P.K.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Custom metadata
                All relevant data are within the manuscript and Supporting Information files except for the protein structure coordinates, which are available from the Protein Data Bank ( http://www.pdb.org/pdb/home/home.do) under PDB entries: 4MGI; 4MGK; 4MGY; 4MGZ; 4MH0.

                Life sciences
                Life sciences

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