11
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Machine Learning for Pulmonary and Critical Care Medicine: A Narrative Review

      review-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Machine learning (ML) is a discipline of computer science in which statistical methods are applied to data in order to classify, predict, or optimize, based on previously observed data. Pulmonary and critical care medicine have seen a surge in the application of this methodology, potentially delivering improvements in our ability to diagnose, treat, and better understand a multitude of disease states. Here we review the literature and provide a detailed overview of the recent advances in ML as applied to these areas of medicine. In addition, we discuss both the significant benefits of this work as well as the challenges in the implementation and acceptance of this non-traditional methodology for clinical purposes.

          Related collections

          Most cited references20

          • Record: found
          • Abstract: found
          • Article: found
          Is Open Access

          Deep learning for chest radiograph diagnosis: A retrospective comparison of the CheXNeXt algorithm to practicing radiologists

          Background Chest radiograph interpretation is critical for the detection of thoracic diseases, including tuberculosis and lung cancer, which affect millions of people worldwide each year. This time-consuming task typically requires expert radiologists to read the images, leading to fatigue-based diagnostic error and lack of diagnostic expertise in areas of the world where radiologists are not available. Recently, deep learning approaches have been able to achieve expert-level performance in medical image interpretation tasks, powered by large network architectures and fueled by the emergence of large labeled datasets. The purpose of this study is to investigate the performance of a deep learning algorithm on the detection of pathologies in chest radiographs compared with practicing radiologists. Methods and findings We developed CheXNeXt, a convolutional neural network to concurrently detect the presence of 14 different pathologies, including pneumonia, pleural effusion, pulmonary masses, and nodules in frontal-view chest radiographs. CheXNeXt was trained and internally validated on the ChestX-ray8 dataset, with a held-out validation set consisting of 420 images, sampled to contain at least 50 cases of each of the original pathology labels. On this validation set, the majority vote of a panel of 3 board-certified cardiothoracic specialist radiologists served as reference standard. We compared CheXNeXt’s discriminative performance on the validation set to the performance of 9 radiologists using the area under the receiver operating characteristic curve (AUC). The radiologists included 6 board-certified radiologists (average experience 12 years, range 4–28 years) and 3 senior radiology residents, from 3 academic institutions. We found that CheXNeXt achieved radiologist-level performance on 11 pathologies and did not achieve radiologist-level performance on 3 pathologies. The radiologists achieved statistically significantly higher AUC performance on cardiomegaly, emphysema, and hiatal hernia, with AUCs of 0.888 (95% confidence interval [CI] 0.863–0.910), 0.911 (95% CI 0.866–0.947), and 0.985 (95% CI 0.974–0.991), respectively, whereas CheXNeXt’s AUCs were 0.831 (95% CI 0.790–0.870), 0.704 (95% CI 0.567–0.833), and 0.851 (95% CI 0.785–0.909), respectively. CheXNeXt performed better than radiologists in detecting atelectasis, with an AUC of 0.862 (95% CI 0.825–0.895), statistically significantly higher than radiologists' AUC of 0.808 (95% CI 0.777–0.838); there were no statistically significant differences in AUCs for the other 10 pathologies. The average time to interpret the 420 images in the validation set was substantially longer for the radiologists (240 minutes) than for CheXNeXt (1.5 minutes). The main limitations of our study are that neither CheXNeXt nor the radiologists were permitted to use patient history or review prior examinations and that evaluation was limited to a dataset from a single institution. Conclusions In this study, we developed and validated a deep learning algorithm that classified clinically important abnormalities in chest radiographs at a performance level comparable to practicing radiologists. Once tested prospectively in clinical settings, the algorithm could have the potential to expand patient access to chest radiograph diagnostics.
            Bookmark
            • Record: found
            • Abstract: not found
            • Article: not found

            Medical Image Analysis using Convolutional Neural Networks: A Review

              Bookmark
              • Record: found
              • Abstract: found
              • Article: found
              Is Open Access

              Machine learning in medicine: a practical introduction

              Background Following visible successes on a wide range of predictive tasks, machine learning techniques are attracting substantial interest from medical researchers and clinicians. We address the need for capacity development in this area by providing a conceptual introduction to machine learning alongside a practical guide to developing and evaluating predictive algorithms using freely-available open source software and public domain data. Methods We demonstrate the use of machine learning techniques by developing three predictive models for cancer diagnosis using descriptions of nuclei sampled from breast masses. These algorithms include regularized General Linear Model regression (GLMs), Support Vector Machines (SVMs) with a radial basis function kernel, and single-layer Artificial Neural Networks. The publicly-available dataset describing the breast mass samples (N=683) was randomly split into evaluation (n=456) and validation (n=227) samples. We trained algorithms on data from the evaluation sample before they were used to predict the diagnostic outcome in the validation dataset. We compared the predictions made on the validation datasets with the real-world diagnostic decisions to calculate the accuracy, sensitivity, and specificity of the three models. We explored the use of averaging and voting ensembles to improve predictive performance. We provide a step-by-step guide to developing algorithms using the open-source R statistical programming environment. Results The trained algorithms were able to classify cell nuclei with high accuracy (.94 -.96), sensitivity (.97 -.99), and specificity (.85 -.94). Maximum accuracy (.96) and area under the curve (.97) was achieved using the SVM algorithm. Prediction performance increased marginally (accuracy =.97, sensitivity =.99, specificity =.95) when algorithms were arranged into a voting ensemble. Conclusions We use a straightforward example to demonstrate the theory and practice of machine learning for clinicians and medical researchers. The principals which we demonstrate here can be readily applied to other complex tasks including natural language processing and image recognition. Electronic supplementary material The online version of this article (10.1186/s12874-019-0681-4) contains supplementary material, which is available to authorized users.
                Bookmark

                Author and article information

                Contributors
                emlodzin@bidmc.harvard.edu
                Journal
                Pulm Ther
                Pulm Ther
                Pulmonary Therapy
                Springer Healthcare (Cheshire )
                2364-1754
                2364-1746
                5 February 2020
                5 February 2020
                June 2020
                : 6
                : 1
                : 67-77
                Affiliations
                [1 ]GRID grid.239395.7, ISNI 0000 0000 9011 8547, Department of Internal Medicine, , Beth Israel Deaconess Medical Center, ; Boston, MA 02215 USA
                [2 ]GRID grid.116068.8, ISNI 0000 0001 2341 2786, MIT Critical Data, Laboratory for Computational Physiology, Harvard-MIT Health Sciences and Technology, , Massachusetts Institute of Technology, ; Cambridge, MA 02139 USA
                [3 ]GRID grid.27755.32, ISNI 0000 0000 9136 933X, Departments of Anesthesiology and Neurosurgery, , University of Virginia School of Medicine, ; Charlottesville, VA 22908 USA
                [4 ]GRID grid.27755.32, ISNI 0000 0000 9136 933X, Center for Advanced Medical Analytics, , University of Virginia School of Medicine, ; Charlottesville, VA 22908 USA
                [5 ]GRID grid.239395.7, ISNI 0000 0000 9011 8547, Division of Pulmonary Critical Care and Sleep Medicine, , Beth Israel Deaconess Medical Center, ; Boston, MA 02215 USA
                Article
                110
                10.1007/s41030-020-00110-z
                7229087
                32048244
                92267412-a815-43cd-be72-249e86e5e313
                © The Author(s) 2020

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License ( http://creativecommons.org/licenses/by-nc/4.0/), which permits any non-commercial use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 27 December 2019
                Categories
                Review
                Custom metadata
                © The Author(s) 2020

                artificial intelligence,chronic obstructive pulmonary disease,computed tomography,critical care,machine learning,mechanical ventilation,neural networks,pulmonary,sepsis

                Comments

                Comment on this article