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      Guiding functional connectivity estimation by structural connectivity in MEG: an application to discrimination of conditions of mild cognitive impairment

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          Abstract

          Whole brain resting state connectivity is a promising biomarker that might help to obtain an early diagnosis in many neurological diseases, such as dementia. Inferring resting-state connectivity is often based on correlations, which are sensitive to indirect connections, leading to an inaccurate representation of the real backbone of the network. The precision matrix is a better representation for whole brain connectivity, as it considers only direct connections. The network structure can be estimated using the graphical lasso (GL), which achieves sparsity through l 1 -regularization on the precision matrix. In this paper, we propose a structural connectivity adaptive version of the GL, where weaker anatomical connections are represented as stronger penalties on the corresponding functional connections. We applied beamformer source reconstruction to the resting state MEG recordings of 81 subjects, where 29 were healthy controls, 22 were single-domain amnestic Mild Cognitive Impaired (MCI), and 30 were multiple-domain amnestic MCI. An atlas-based anatomical parcellation of 66 regions was obtained for each subject, and time series were assigned to each of the regions. The fiber densities between the regions, obtained with deterministic tractography from diffusion-weighted MRI, were used to define the anatomical connectivity. Precision matrices were obtained with the region specific time series in five different frequency bands. We compared our method with the traditional GL and a functional adaptive version of the GL, in terms of log-likelihood and classification accuracies between the three groups. We conclude that introducing an anatomical prior improves the expressivity of the model and, in most cases, leads to a better classification between groups.

          Highlights

          • We propose an anatomy-driven method for functional connectivity estimation in MEG.

          • Structural prior contributes to a better representation of the functional connectivity.

          • The proposed method is shown to be useful as a biomarker for classification of MCI.

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          We consider the problem of estimating sparse graphs by a lasso penalty applied to the inverse covariance matrix. Using a coordinate descent procedure for the lasso, we develop a simple algorithm--the graphical lasso--that is remarkably fast: It solves a 1000-node problem ( approximately 500,000 parameters) in at most a minute and is 30-4000 times faster than competing methods. It also provides a conceptual link between the exact problem and the approximation suggested by Meinshausen and Bühlmann (2006). We illustrate the method on some cell-signaling data from proteomics.
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            The Adaptive Lasso and Its Oracle Properties

            Hui Zou (2006)
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              Searching for a baseline: functional imaging and the resting human brain.

              Functional brain imaging in humans has revealed task-specific increases in brain activity that are associated with various mental activities. In the same studies, mysterious, task-independent decreases have also frequently been encountered, especially when the tasks of interest have been compared with a passive state, such as simple fixation or eyes closed. These decreases have raised the possibility that there might be a baseline or resting state of brain function involving a specific set of mental operations. We explore this possibility, including the manner in which we might define a baseline and the implications of such a baseline for our understanding of brain function.
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                Author and article information

                Contributors
                Journal
                Neuroimage
                Neuroimage
                Neuroimage
                Academic Press
                1053-8119
                1095-9572
                01 November 2014
                01 November 2014
                : 101
                : 765-777
                Affiliations
                [a ]Laboratory of Neuroimaging, Centre for Biomedical Technology, Universidad Politécnica de Madrid, Campus de Montegancedo, 28223 Pozuelo de Alarcón, Spain
                [b ]Laboratory of Cognitive and Computational Neuroscience, Centre for Biomedical Technology, Universidad Politécnica de Madrid, Campus de Montegancedo, 28223 Pozuelo de Alarcón, Spain
                [c ]Oxford Center for Human Brain Activity (OHBA), University of Oxford, Oxford, United Kingdom
                [d ]The Oxford Centre for Functional MRI of the Brain (FMRIB), University of Oxford, Oxford, United Kingdom
                [e ]Department of Neurology, Hospital Clínico San Carlos, Madrid, Spain
                Author notes
                [* ]Corresponding author at: Center of Biomedical Technology (CTB), Parque Científico y Tecnológico de la UPM, Campus de Montegancedo, 28223 Pozuelo de Alarcón, Madrid, ES. joseangel.pineda@ 123456ctb.upm.es
                Article
                S1053-8119(14)00652-1
                10.1016/j.neuroimage.2014.08.002
                4312351
                25111472
                937e1170-8303-44a1-bc83-feec08d6150e
                © 2014 The Authors. Published by Elsevier Inc.
                History
                : 1 August 2014
                Categories
                Article

                Neurosciences
                resting state,diffusion tensor imaging,magnetoencephalography,multimodal neuroimaging,multivariate sparse regression,graphical lasso,mild cognitive impairment,machine learning

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