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      Nuclear hormone receptor co-repressors: Structure and function

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          Highlights

          ► Co-repressors SMRT/NCoR act as “hub proteins”. ► SMRT/NCoR integrate transcription factor and histone modifying enzyme signaling. ► Structures of co-repressor complexes. ► Structural studies provide mechanistic, and potentially therapeutic, insights.

          Abstract

          Co-repressor proteins, such as SMRT and NCoR, mediate the repressive activity of unliganded nuclear receptors and other transcription factors. They appear to act as intrinsically disordered “hub proteins” that integrate the activities of a range of transcription factors with a number of histone modifying enzymes. Although these co-repressor proteins are challenging targets for structural studies due to their largely unstructured character, a number of structures have recently been determined of co-repressor interaction regions in complex with their interacting partners. These have yielded considerable insight into the mechanism of assembly of these complexes, the structural basis for the specificity of the interactions and also open opportunities for targeting these interactions therapeutically.

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          Most cited references92

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          Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes.

          Histone acetyltransferases (HATs) and deacetylases (HDACs) function antagonistically to control histone acetylation. As acetylation is a histone mark for active transcription, HATs have been associated with active and HDACs with inactive genes. We describe here genome-wide mapping of HATs and HDACs binding on chromatin and find that both are found at active genes with acetylated histones. Our data provide evidence that HATs and HDACs are both targeted to transcribed regions of active genes by phosphorylated RNA Pol II. Furthermore, the majority of HDACs in the human genome function to reset chromatin by removing acetylation at active genes. Inactive genes that are primed by MLL-mediated histone H3K4 methylation are subject to a dynamic cycle of acetylation and deacetylation by transient HAT/HDAC binding, preventing Pol II from binding to these genes but poising them for future activation. Silent genes without any H3K4 methylation signal show no evidence of being bound by HDACs.
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            The nuclear receptor superfamily: the second decade.

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              A signature motif in transcriptional co-activators mediates binding to nuclear receptors.

              The binding of lipophilic hormones, retinoids and vitamins to members of the nuclear-receptor superfamily modifies the DNA-binding and transcriptional properties of these receptors, resulting in the activation or repression of target genes. Ligand binding induces conformational changes in nuclear receptors and promotes their association with a diverse group of nuclear proteins, including SRC-1/p160, TIF-2/GRIP-1 and CBP/p300 which function as co-activators of transcription, and RIP-140, TIF-1 and TRIP-1/SUG-1 whose functions are unclear. Here we report that a short sequence motif LXXLL (where L is leucine and X is any amino acid) present in RIP-140, SRC-1 and CBP is necessary and sufficient to mediate the binding of these proteins to liganded nuclear receptors. We show that the ability of SRC-1 to bind the oestrogen receptor and enhance its transcriptional activity is dependent upon the integrity of the LXXLL motifs and on key hydrophobic residues in a conserved helix (helix 12) of the oestrogen receptor that are required for its ligand-induced activation function. We propose that the LXXLL motif is a signature sequence that facilitates the interaction of different proteins with nuclear receptors, and is thus a defining feature of a new family of nuclear proteins.
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                Author and article information

                Journal
                Mol Cell Endocrinol
                Mol. Cell. Endocrinol
                Molecular and Cellular Endocrinology
                North Holland Publishing
                0303-7207
                1872-8057
                30 January 2012
                30 January 2012
                : 348-135
                : 2-3
                : 440-449
                Affiliations
                Henry Wellcome Laboratories of Structural Biology, Department of Biochemistry, University of Leicester, Leicester LE1 9HN, UK
                Author notes
                [* ]Corresponding author. john.schwabe@ 123456le.ac.uk
                Article
                MCE8011
                10.1016/j.mce.2011.08.033
                3315023
                21925568
                937e731c-9026-4a5a-adbc-f9e7e12d43c2
                © 2012 Elsevier Ireland Ltd.

                This document may be redistributed and reused, subject to certain conditions.

                History
                Categories
                Review

                Endocrinology & Diabetes
                hid, histone interaction domain,hdac, histone deacetylase,hdac,rrm, rna recognition motif,gps2,tbl1,lbd, ligand binding domain,id, interaction domain,co-repressor,smrt/ncor,nuclear receptor

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