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      Dialkylresorcinols as bacterial signaling molecules.

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          Abstract

          It is well recognized that bacteria communicate via small diffusible molecules, a process termed quorum sensing. The best understood quorum sensing systems are those that use acylated homoserine lactones (AHLs) for communication. The prototype of those systems consists of a LuxI-like AHL synthase and a cognate LuxR receptor that detects the signal. However, many proteobacteria possess LuxR receptors, yet lack any LuxI-type synthase, and thus these receptors are referred to as LuxR orphans or solos. In addition to the well-known AHLs, little is known about the signaling molecules that are sensed by LuxR solos. Here, we describe a novel cell-cell communication system in the insect and human pathogen Photorhabdus asymbiotica. We identified the LuxR homolog PauR to sense dialkylresorcinols (DARs) and cyclohexanediones (CHDs) instead of AHLs as signals. The DarABC synthesis pathway produces the molecules, and the entire system emerged as important for virulence. Moreover, we have analyzed more than 90 different Photorhabdus strains by HPLC/MS and showed that these DARs and CHDs are specific to the human pathogen P. asymbiotica. On the basis of genomic evidence, 116 other bacterial species are putative DAR producers, among them many human pathogens. Therefore, we discuss the possibility of DARs as novel and widespread bacterial signaling molecules and show that bacterial cell-cell communication goes far beyond AHL signaling in nature.

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          Most cited references31

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          Quorum sensing: cell-to-cell communication in bacteria.

          Bacteria communicate with one another using chemical signal molecules. As in higher organisms, the information supplied by these molecules is critical for synchronizing the activities of large groups of cells. In bacteria, chemical communication involves producing, releasing, detecting, and responding to small hormone-like molecules termed autoinducers . This process, termed quorum sensing, allows bacteria to monitor the environment for other bacteria and to alter behavior on a population-wide scale in response to changes in the number and/or species present in a community. Most quorum-sensing-controlled processes are unproductive when undertaken by an individual bacterium acting alone but become beneficial when carried out simultaneously by a large number of cells. Thus, quorum sensing confuses the distinction between prokaryotes and eukaryotes because it enables bacteria to act as multicellular organisms. This review focuses on the architectures of bacterial chemical communication networks; how chemical information is integrated, processed, and transduced to control gene expression; how intra- and interspecies cell-cell communication is accomplished; and the intriguing possibility of prokaryote-eukaryote cross-communication.
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            Is Open Access

            CDD: conserved domains and protein three-dimensional structure

            CDD, the Conserved Domain Database, is part of NCBI’s Entrez query and retrieval system and is also accessible via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml. CDD provides annotation of protein sequences with the location of conserved domain footprints and functional sites inferred from these footprints. Pre-computed annotation is available via Entrez, and interactive search services accept single protein or nucleotide queries, as well as batch submissions of protein query sequences, utilizing RPS-BLAST to rapidly identify putative matches. CDD incorporates several protein domain and full-length protein model collections, and maintains an active curation effort that aims at providing fine grained classifications for major and well-characterized protein domain families, as supported by available protein three-dimensional (3D) structure and the published literature. To this date, the majority of protein 3D structures are represented by models tracked by CDD, and CDD curators are characterizing novel families that emerge from protein structure determination efforts.
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              The logrank test.

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                Author and article information

                Journal
                Proc. Natl. Acad. Sci. U.S.A.
                Proceedings of the National Academy of Sciences of the United States of America
                1091-6490
                0027-8424
                Jan 13 2015
                : 112
                : 2
                Affiliations
                [1 ] Ludwig-Maximilians-Universität München, Biozentrum, Bereich Mikrobiologie, 82152 Martinsried/München, Germany;
                [2 ] Goethe-Universität Frankfurt, Merck Stiftungsprofessur für Molekulare Biotechnologie, Fachbereich Biowissenschaften, 60438 Frankfurt am Main, Germany; and.
                [3 ] Goethe-Universität Frankfurt, Merck Stiftungsprofessur für Molekulare Biotechnologie, Fachbereich Biowissenschaften, 60438 Frankfurt am Main, Germany; and Buchmann Institute for Molecular Life Sciences, Goethe Universität Frankfurt, 60438 Frankfurt am Main, Germany h.bode@bio.uni-frankfurt.de heermann@lmu.de.
                [4 ] Ludwig-Maximilians-Universität München, Biozentrum, Bereich Mikrobiologie, 82152 Martinsried/München, Germany; h.bode@bio.uni-frankfurt.de heermann@lmu.de.
                Article
                1417685112
                10.1073/pnas.1417685112
                25550519
                968e7e95-b9ad-4908-830b-7e3adfda7a3b
                History

                LuxR solos,Photorhabdus,cell–cell communication,pathogenic bacteria,quorum sensing

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