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      A Comparative Study of Feature Selection Methods for the Discriminative Analysis of Temporal Lobe Epilepsy

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          Abstract

          It is crucial to differentiate patients with temporal lobe epilepsy (TLE) from the healthy population and determine abnormal brain regions in TLE. The cortical features and changes can reveal the unique anatomical patterns of brain regions from structural magnetic resonance (MR) images. In this study, structural MR images from 41 patients with left TLE, 34 patients with right TLE, and 58 normal controls (NC) were acquired, and four kinds of cortical measures, namely cortical thickness, cortical surface area, gray matter volume (GMV), and mean curvature, were explored for discriminative analysis. Three feature selection methods including the independent sample t-test filtering, the sparse-constrained dimensionality reduction model (SCDRM), and the support vector machine-recursive feature elimination (SVM-RFE) were investigated to extract dominant features among the compared groups for classification using the support vector machine (SVM) classifier. The results showed that the SVM-RFE achieved the highest performance (most classifications with more than 84% accuracy), followed by the SCDRM, and the t-test. Especially, the surface area and GMV exhibited prominent discriminative ability, and the performance of the SVM was improved significantly when the four cortical measures were combined. Additionally, the dominant regions with higher classification weights were mainly located in the temporal and the frontal lobe, including the entorhinal cortex, rostral middle frontal, parahippocampal cortex, superior frontal, insula, and cuneus. This study concluded that the cortical features provided effective information for the recognition of abnormal anatomical patterns and the proposed methods had the potential to improve the clinical diagnosis of TLE.

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          Most cited references46

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          Wrappers for feature subset selection

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            A hybrid approach to the skull stripping problem in MRI.

            We present a novel skull-stripping algorithm based on a hybrid approach that combines watershed algorithms and deformable surface models. Our method takes advantage of the robustness of the former as well as the surface information available to the latter. The algorithm first localizes a single white matter voxel in a T1-weighted MRI image, and uses it to create a global minimum in the white matter before applying a watershed algorithm with a preflooding height. The watershed algorithm builds an initial estimate of the brain volume based on the three-dimensional connectivity of the white matter. This first step is robust, and performs well in the presence of intensity nonuniformities and noise, but may erode parts of the cortex that abut bright nonbrain structures such as the eye sockets, or may remove parts of the cerebellum. To correct these inaccuracies, a surface deformation process fits a smooth surface to the masked volume, allowing the incorporation of geometric constraints into the skull-stripping procedure. A statistical atlas, generated from a set of accurately segmented brains, is used to validate and potentially correct the segmentation, and the MRI intensity values are locally re-estimated at the boundary of the brain. Finally, a high-resolution surface deformation is performed that accurately matches the outer boundary of the brain, resulting in a robust and automated procedure. Studies by our group and others outperform other publicly available skull-stripping tools. Copyright 2004 Elsevier Inc.
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              Using Support Vector Machine to identify imaging biomarkers of neurological and psychiatric disease: a critical review.

              Standard univariate analysis of neuroimaging data has revealed a host of neuroanatomical and functional differences between healthy individuals and patients suffering a wide range of neurological and psychiatric disorders. Significant only at group level however these findings have had limited clinical translation, and recent attention has turned toward alternative forms of analysis, including Support-Vector-Machine (SVM). A type of machine learning, SVM allows categorisation of an individual's previously unseen data into a predefined group using a classification algorithm, developed on a training data set. In recent years, SVM has been successfully applied in the context of disease diagnosis, transition prediction and treatment prognosis, using both structural and functional neuroimaging data. Here we provide a brief overview of the method and review those studies that applied it to the investigation of Alzheimer's disease, schizophrenia, major depression, bipolar disorder, presymptomatic Huntington's disease, Parkinson's disease and autistic spectrum disorder. We conclude by discussing the main theoretical and practical challenges associated with the implementation of this method into the clinic and possible future directions. Copyright © 2012 Elsevier Ltd. All rights reserved.
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                Author and article information

                Contributors
                Journal
                Front Neurol
                Front Neurol
                Front. Neurol.
                Frontiers in Neurology
                Frontiers Media S.A.
                1664-2295
                06 December 2017
                2017
                : 8
                : 633
                Affiliations
                [1] 1Department of Biomedical Engineering, South China University of Technology , Guangzhou, China
                [2] 2Department of Radiation Oncology, The People’s Hospital of Gaozhou , Gaozhou, China
                [3] 3Medical Imaging Center, Guangdong 999 Brain Hospital , Guangzhou, China
                Author notes

                Edited by: Yuping Wang, Capital Medical University, China

                Reviewed by: Marino M. Bianchin, Federal University of Rio Grande do Sul (UFRGS), Brazil; Yu-Feng Zang, Hangzhou Normal University, China

                *Correspondence: Shengwen Guo, shwguo@ 123456scut.edu.cn ; Wensheng Wang, wws161616@ 123456sina.com

                Specialty section: This article was submitted to Epilepsy, a section of the journal Frontiers in Neurology

                Article
                10.3389/fneur.2017.00633
                5770628
                9898962c-93b5-473c-92d4-f8ed6d93f846
                Copyright © 2017 Lai, Guo, Cheng and Wang.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 25 October 2016
                : 13 November 2017
                Page count
                Figures: 7, Tables: 4, Equations: 7, References: 60, Pages: 13, Words: 8073
                Funding
                Funded by: National Natural Science Foundation of China 10.13039/501100001809
                Award ID: 31371008
                Funded by: Science and Technology Planning Project of Guangdong Province
                Award ID: 2015A02024006
                Funded by: Guangzhou Bureau of Science and Technology
                Award ID: 201604020170
                Categories
                Neuroscience
                Original Research

                Neurology
                temporal lobe epilepsy,magnetic resonance images,cortical features,feature selection,classification

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