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      Gastrointestinal parasite infections and self-medication in wild chimpanzees surviving in degraded forest fragments within an agricultural landscape mosaic in Uganda

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          Abstract

          Monitoring health in wild great apes is integral to their conservation and is especially important where they share habitats with humans, given the potential for zoonotic pathogen exchange. We studied the intestinal parasites of wild chimpanzees ( Pan troglodytes schweinfurthii) inhabiting degraded forest fragments amid farmland and villages in Bulindi, Uganda. We first identified protozoan and helminth parasites infecting this population. Sixteen taxa were demonstrated microscopically (9 protozoa, 5 nematodes, 1 cestode, and 1 trematode). DNA sequence analysis enabled more precise identification of larval nematodes (e.g. Oesophagostomum stephanostomum, O. bifurcum, Strongyloides fuelleborni, Necator sp. Type II) and tapeworm proglottids (genus Bertiella). To better understand the ecology of infections, we used multidimensional scaling analysis to reveal general patterns of association among parasites, climate, and whole leaf swallowing–a prevalent self-medicative behaviour at Bulindi linked to control of nodular worms ( Oesophagostomum spp.). Prevalence of parasites varied with climate in diverse ways. For example, Oesophagostomum sp. was detected in faeces at higher frequencies with increasing rainfall but was most clearly associated with periods of low temperature. Certain parasites occurred together within chimpanzee hosts more or less frequently than expected by chance. For example, the commensal ciliate Troglodytella abrassarti was negatively associated with Balantidium coli and Oesophagostomum sp., possibly because the latter taxa make the large intestine less suitable for T. abrassarti. Whole leaves in faeces showed independent associations with the prevalence of Oesophagostomum sp., Strongyloides sp., and hookworm by microscopic examination, and with egestion of adult O. stephanostomum by macroscopic inspection. All parasites identified to species or genus have been reported in wild chimpanzees inhabiting less-disturbed environments than Bulindi. Nevertheless, several disease-causing taxa infecting these chimpanzees are potentially transmissible between apes and humans (e.g. rhabditoid and strongyle nematodes), underscoring the importance of identifying and reducing risks of pathogen exchange in shared landscapes.

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          Improved tools for biological sequence comparison.

          We have developed three computer programs for comparisons of protein and DNA sequences. They can be used to search sequence data bases, evaluate similarity scores, and identify periodic structures based on local sequence similarity. The FASTA program is a more sensitive derivative of the FASTP program, which can be used to search protein or DNA sequence data bases and can compare a protein sequence to a DNA sequence data base by translating the DNA data base as it is searched. FASTA includes an additional step in the calculation of the initial pairwise similarity score that allows multiple regions of similarity to be joined to increase the score of related sequences. The RDF2 program can be used to evaluate the significance of similarity scores using a shuffling method that preserves local sequence composition. The LFASTA program can display all the regions of local similarity between two sequences with scores greater than a threshold, using the same scoring parameters and a similar alignment algorithm; these local similarities can be displayed as a "graphic matrix" plot or as individual alignments. In addition, these programs have been generalized to allow comparison of DNA or protein sequences based on a variety of alternative scoring matrices.
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            Species interactions in a parasite community drive infection risk in a wildlife population.

            Most hosts, including humans, are simultaneously or sequentially infected with several parasites. A key question is whether patterns of coinfection arise because infection by one parasite species affects susceptibility to others or because of inherent differences between hosts. We used time-series data from individual hosts in natural populations to analyze patterns of infection risk for a microparasite community, detecting large positive and negative effects of other infections. Patterns remain once variations in host susceptibility and exposure are accounted for. Indeed, effects are typically of greater magnitude, and explain more variation in infection risk, than the effects associated with host and environmental factors more commonly considered in disease studies. We highlight the danger of mistaken inference when considering parasite species in isolation rather than parasite communities.
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              Emphasizing the ecology in parasite community ecology.

              In natural systems, individuals are often co-infected by many species of parasites. However, the significance of interactions between species and the processes that shape within-host parasite communities remain unclear. Studies of parasite community ecology are often descriptive, focusing on patterns of parasite abundance across host populations rather than on the mechanisms that underlie interactions within a host. These within-host interactions are crucial for determining the fitness and transmissibility of co-infecting parasite species. Here, we highlight how techniques from community ecology can be used to restructure the approaches used to study parasite communities. We discuss insights offered by this mechanistic approach that will be crucial for predicting the impact on wildlife and human health of disease control measures, climate change or novel parasite species introductions.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: MethodologyRole: ResourcesRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: InvestigationRole: Writing – review & editing
                Role: ConceptualizationRole: MethodologyRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                10 July 2017
                2017
                : 12
                : 7
                : e0180431
                Affiliations
                [1 ] Anthropology Centre for Conservation, Environment and Development, Oxford Brookes University, Oxford, United Kingdom
                [2 ] Bulindi Chimpanzee and Community Project, Hoima, Uganda
                [3 ] Department of Infectious Disease Control, Faculty of Medicine, Oita University, Hasama, Yufu, Oita, Japan
                [4 ] Department of Biology, Faculty of Medicine, Oita University, Hasama, Yufu, Oita, Japan
                [5 ] Department of Psychology and Behavioral Neuroscience, Randolph-Macon College, Ashland, Virginia, United States of America
                [6 ] Primate Research Institute, Kyoto University, Inuyama, Japan
                University of Florida, UNITED STATES
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                http://orcid.org/0000-0002-5925-1483
                Article
                PONE-D-16-45419
                10.1371/journal.pone.0180431
                5503243
                28692673
                98a4f0cb-2e6a-4f55-8069-b79e131a4b49
                © 2017 McLennan et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 25 November 2016
                : 15 June 2017
                Page count
                Figures: 8, Tables: 4, Pages: 29
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100001871, Fundação para a Ciência e a Tecnologia;
                Award ID: PTDC/CS-ANT/121124/2010
                Funded by: funder-id http://dx.doi.org/10.13039/501100000275, Leverhulme Trust;
                Award ID: ECF-2013-057
                Award Recipient :
                M.M's fieldwork for this study was conducted in 2012-13. It was supported by a grant awarded to Dr Kimberley Hockings, (Lisbon University, hock@ 123456fcsh.unl.pt ) from Fundação para a Ciência e a Tecnologia, Portugal, (ref: PTDC/CS-ANT/121124/2010). www.fct.pt/. During some of the preparation of this manuscript (between Jan and Aug 2016), M.M. was supported by a fellowship from the Leverhulme Trust, UK. (Ref: ECF-2013-057). https://www.leverhulme.ac.uk/. Coauthors did not receive any funding for this research, and did not contribute funds from any other source. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Organisms
                Animals
                Vertebrates
                Amniotes
                Mammals
                Primates
                Apes
                Chimpanzees
                Medicine and Health Sciences
                Parasitic Diseases
                Nematode Infections
                Medicine and Health Sciences
                Parasitic Diseases
                Parasitic Intestinal Diseases
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Biology and Life Sciences
                Organisms
                Animals
                Invertebrates
                Nematoda
                Strongyloides
                Biology and Life Sciences
                Physiology
                Physiological Processes
                Ingestion
                Swallowing
                Medicine and Health Sciences
                Physiology
                Physiological Processes
                Ingestion
                Swallowing
                Medicine and Health Sciences
                Parasitic Diseases
                Biology and Life Sciences
                Organisms
                Animals
                Invertebrates
                Helminths
                Hookworms
                Custom metadata
                DNA sequences obtained were registered in DDBJ (DNA Data Bank of Japan) / EMBL-Bank / GenBank (Accession numbers: LC185219-LC185221, LC185224-LC185229). All other relevant data are within the paper and its Supporting Information Data File, which contains all raw data on which statistical analyses were performed.

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