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      Whether Gametophytes Are Reduced or Unreduced in Angiosperms Might Be Determined Metabolically

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          Abstract

          In angiosperms, meiotic failure coupled with the formation of genetically unreduced gametophytes in ovules (apomeiosis) constitute major components of gametophytic apomixis. These aberrant developmental events are generally thought to be caused by mutation. However, efforts to locate the responsible mutations have failed. Herein, we tested a fundamentally different hypothesis: apomeiosis is a polyphenism of meiosis, with meiosis and apomeiosis being maintained by different states of metabolic homeostasis. Microarray analyses of ovules and pistils were used to differentiate meiotic from apomeiotic processes in Boechera (Brassicaceae). Genes associated with translation, cell division, epigenetic silencing, flowering, and meiosis characterized sexual Boechera (meiotic). In contrast, genes associated with stress responses, abscisic acid signaling, reactive oxygen species production, and stress attenuation mechanisms characterized apomictic Boechera (apomeiotic). We next tested whether these metabolic differences regulate reproductive mode. Apomeiosis switched to meiosis when premeiotic ovules of apomicts were cultured on media that increased oxidative stress. These treatments included drought, starvation, and H 2O 2 applications. In contrast, meiosis switched to apomeiosis when premeiotic pistils of sexual plants were cultured on media that relieved oxidative stress. These treatments included antioxidants, glucose, abscisic acid, fluridone, and 5-azacytidine. High-frequency apomeiosis was initiated in all sexual species tested: Brassicaceae, Boechera stricta, Boechera exilis, and Arabidopsis thaliana; Fabaceae, Vigna unguiculata; Asteraceae, Antennaria dioica. Unreduced gametophytes formed from ameiotic female and male sporocytes, first division restitution dyads, and nucellar cells. These results are consistent with modes of reproduction and types of apomixis, in natural apomicts, being regulated metabolically.

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          A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures

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            PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.

            DNA microarrays can be used to identify gene expression changes characteristic of human disease. This is challenging, however, when relevant differences are subtle at the level of individual genes. We introduce an analytical strategy, Gene Set Enrichment Analysis, designed to detect modest but coordinate changes in the expression of groups of functionally related genes. Using this approach, we identify a set of genes involved in oxidative phosphorylation whose expression is coordinately decreased in human diabetic muscle. Expression of these genes is high at sites of insulin-mediated glucose disposal, activated by PGC-1alpha and correlated with total-body aerobic capacity. Our results associate this gene set with clinically important variation in human metabolism and illustrate the value of pathway relationships in the analysis of genomic profiling experiments.
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              ROS Are Good.

              Reactive oxygen species (ROS) are thought to play a dual role in plant biology. They are required for many important signaling reactions, but are also toxic byproducts of aerobic metabolism. Recent studies revealed that ROS are necessary for the progression of several basic biological processes including cellular proliferation and differentiation. Moreover, cell death-that was previously thought to be the outcome of ROS directly killing cells by oxidation, in other words via oxidative stress-is now considered to be the result of ROS triggering a physiological or programmed pathway for cell death. This Opinion focuses on the possibility that ROS are beneficial to plants, supporting cellular proliferation, physiological function, and viability, and that maintaining a basal level of ROS in cells is essential for life.
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                Author and article information

                Journal
                Genes (Basel)
                Genes (Basel)
                genes
                Genes
                MDPI
                2073-4425
                02 December 2020
                December 2020
                : 11
                : 12
                : 1449
                Affiliations
                [1 ]Plants, Soils, and Climate Department, Utah State University, Logan, UT 84322-4820, USA; mayelyn.mateo@ 123456intec.edu.do (M.M.d.A.); gao.lei@ 123456jju.edu.cn (L.G.); david@ 123456sherwoodpethealth.com (D.A.S.); bojprice57@ 123456gmail.com (B.J.P.)
                [2 ]Instituto Tecnológico de Santo Domingo, 10103 Santo Domingo, Dominican Republic
                [3 ]College of Pharmacy and Life Science, Jiujiang University, Jiujiang 332000, China
                [4 ]Sherwood Pet Health, Logan, UT 84321, USA
                [5 ]Caisson Laboratories, Inc., Smithfield, UT 84335, USA; dwivedi1976@ 123456gmail.com (K.K.D.); m.jamison@ 123456elitechgroup.com (M.J.); becky.kowallis@ 123456cytiva.com (B.M.K.)
                [6 ]Crop Improvement Division, Indian Grassland and Fodder Research Institute, 284003 Jhansi, India
                [7 ]Molecular Biology Program, University of Utah, Salt Lake City, UT 84112-5750, USA
                [8 ]Wescor, Inc. An Elitech Company, Logan, UT 84321, USA
                [9 ]Cytiva, Inc., Logan, UT 84321, USA
                Author notes
                [* ]Correspondence: john.carman@ 123456usu.edu ; Tel.: +1-435-512-4913
                [†]

                These authors contributed equally.

                Author information
                https://orcid.org/0000-0001-6285-6013
                Article
                genes-11-01449
                10.3390/genes11121449
                7761559
                33276690
                98e067d2-b31a-4be3-b6a1-3d5f3479dd58
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 19 October 2020
                : 27 November 2020
                Categories
                Article

                5-azacytidine,abscisic acid,apomixis,apospory,diplospory,expression profiling,fluridone,metabolic homeostasis,oxidative stress,sucrose non-fermenting-related protein kinase

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