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      Streptococcus pneumoniae triggers hierarchical autophagy through reprogramming of LAPosome-like vesicles via NDP52-delocalization

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          Abstract

          In innate immunity, multiple autophagic processes eliminate intracellular pathogens, but it remains unclear whether noncanonical autophagy and xenophagy are coordinated, and whether they occur concomitantly or sequentially. Here, we show that Streptococcus pneumoniae, a causative of invasive pneumococcal disease, can trigger FIP200-, PI3P-, and ROS-independent pneumococcus-containing LC3-associated phagosome (LAPosome)-like vacuoles (PcLVs) in an early stage of infection, and that PcLVs are indispensable for subsequent formation of bactericidal pneumococcus-containing autophagic vacuoles (PcAVs). Specifically, we identified LC3- and NDP52-delocalized PcLV, which are intermediates between PcLV and PcAV. Atg14L, Beclin1, and FIP200 were responsible for delocalizing LC3 and NDP52 from PcLVs. Thus, multiple noncanonical and canonical autophagic processes are deployed sequentially against intracellular S. pneumoniae. The Atg16L1 WD domain, p62, NDP52, and poly-Ub contributed to PcLV formation. These findings reveal a previously unidentified hierarchical autophagy mechanism during bactericidal xenophagy against intracellular bacterial pathogens, and should improve our ability to control life-threating pneumococcal diseases.

          Abstract

          Ogawa, Takada et al. show that Streptococcus pneumoniae triggers the formation of pneumococcus-containing LC3-associated phagosome-like vacuoles in an early stage of infection. This study suggests a hierarchical autophagy mechanism activated by intracellular bacterial pathogens.

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          Most cited references32

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          The role of Atg proteins in autophagosome formation.

          Macroautophagy is mediated by a unique organelle, the autophagosome, which encloses a portion of cytoplasm for delivery to the lysosome. Autophagosome formation is dynamically regulated by starvation and other stresses and involves complicated membrane reorganization. Since the discovery of yeast Atg-related proteins, autophagosome formation has been dissected at the molecular level. In this review we describe the molecular mechanism of autophagosome formation with particular focus on the function of Atg proteins and the long-standing discussion regarding the origin of the autophagosome membrane.
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            Loss of the autophagy protein Atg16L1 enhances endotoxin-induced IL-1beta production.

            Systems for protein degradation are essential for tight control of the inflammatory immune response. Autophagy, a bulk degradation system that delivers cytoplasmic constituents into autolysosomes, controls degradation of long-lived proteins, insoluble protein aggregates and invading microbes, and is suggested to be involved in the regulation of inflammation. However, the mechanism underlying the regulation of inflammatory response by autophagy is poorly understood. Here we show that Atg16L1 (autophagy-related 16-like 1), which is implicated in Crohn's disease, regulates endotoxin-induced inflammasome activation in mice. Atg16L1-deficiency disrupts the recruitment of the Atg12-Atg5 conjugate to the isolation membrane, resulting in a loss of microtubule-associated protein 1 light chain 3 (LC3) conjugation to phosphatidylethanolamine. Consequently, both autophagosome formation and degradation of long-lived proteins are severely impaired in Atg16L1-deficient cells. Following stimulation with lipopolysaccharide, a ligand for Toll-like receptor 4 (refs 8, 9), Atg16L1-deficient macrophages produce high amounts of the inflammatory cytokines IL-1beta and IL-18. In lipopolysaccharide-stimulated macrophages, Atg16L1-deficiency causes Toll/IL-1 receptor domain-containing adaptor inducing IFN-beta (TRIF)-dependent activation of caspase-1, leading to increased production of IL-1beta. Mice lacking Atg16L1 in haematopoietic cells are highly susceptible to dextran sulphate sodium-induced acute colitis, which is alleviated by injection of anti-IL-1beta and IL-18 antibodies, indicating the importance of Atg16L1 in the suppression of intestinal inflammation. These results demonstrate that Atg16L1 is an essential component of the autophagic machinery responsible for control of the endotoxin-induced inflammatory immune response.
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              Listeria monocytogenes ActA-mediated escape from autophagic recognition.

              Autophagy degrades unnecessary organelles and misfolded protein aggregates, as well as cytoplasm-invading bacteria. Nevertheless, the bacteria Listeria monocytogenes efficiently escapes autophagy. We show here that recruitment of the Arp2/3 complex and Ena/VASP, via the bacterial ActA protein, to the bacterial surface disguises the bacteria from autophagic recognition, an activity that is independent of the ability to mediate bacterial motility. L. monocytogenes expressing ActA mutants that lack the ability to recruit the host proteins initially underwent ubiquitylation, followed by recruitment of p62 (also known as SQSTM1) and LC3, before finally undergoing autophagy. The ability of ActA to mediate protection from ubiquitylation was further demonstrated by generating aggregate-prone GFP-ActA-Q79C and GFP-ActA-170(*) chimaeras, consisting of GFP (green fluorescent protein), the ActA protein and segments of polyQ or Golgi membrane protein GCP170 (ref. 6). GFP-ActA-Q79C and GFP-ActA-170(*) formed aggregates in the host cell cytoplasm, however, these ActA-containing aggregates were not targeted for association with ubiquitin and p62. Our findings indicate that ActA-mediated host protein recruitment is a unique bacterial disguise tactic to escape from autophagy.
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                Author and article information

                Contributors
                micogawa@nih.go.jp
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                13 January 2020
                13 January 2020
                2020
                : 3
                : 25
                Affiliations
                [1 ]ISNI 0000 0001 2220 1880, GRID grid.410795.e, Department of Bacteriology I, , National Institute of Infectious Diseases, ; 1-23-1, Toyama, Shinjuku-ku, Tokyo 162-8640 Japan
                [2 ]ISNI 0000 0004 1936 9975, GRID grid.5290.e, Department of Life Science and Medical Bioscience, , Waseda University, ; 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480 Japan
                [3 ]ISNI 0000 0001 1033 6139, GRID grid.268441.d, Department of Microbiology, , Yokohama City University Graduate School of Medicine, ; 3-9 Fukuura, Kanazawa-ku, Yokohama-shi, Kanagawa 236-0004 Japan
                [4 ]ISNI 0000 0001 0029 6233, GRID grid.252643.4, School of Veterinary Medicine, , Azabu University, Fuchinobe, ; Sagamihara-shi, Kanagawa 229-8501 Japan
                [5 ]ISNI 0000 0004 1762 2738, GRID grid.258269.2, Laboratory of Morphology and Image Analysis, Research Support Center, , Juntendo University, ; 2-1-1, Hongo, Bunkyo-ku, Tokyo 113-8421 Japan
                [6 ]ISNI 0000 0004 1762 2738, GRID grid.258269.2, Department of Cellular and Molecular Neuropathology, Graduate School of Medicine, , Juntendo University, ; 2-1-1, Hongo, Bunkyo-ku, Tokyo 113-8421 Japan
                [7 ]ISNI 0000 0001 2179 9593, GRID grid.24827.3b, Department of Cancer Biology, , University of Cincinnati College of Medicine, ; CARE/Crawley Building, Suite E-870 3230 Eden Avenue, Cincinnati, OH 45267 USA
                [8 ]ISNI 0000 0004 1936 9975, GRID grid.5290.e, Computational Bio Big-Data Open Innovation Laboratory, , AIST-Waseda University, ; 3-4-1 Okubo, Shinjuku-ku, Tokyo 169–0072 Japan
                [9 ]ISNI 0000 0004 1936 9975, GRID grid.5290.e, Research Organization for Nano & Life Innovation, , Waseda University, ; 513 Wasedatsurumaki-cho, Shinjuku-ku, Tokyo 162–0041 Japan
                [10 ]ISNI 0000 0004 1936 9975, GRID grid.5290.e, Institute for Advanced Research of Biosystem Dynamics, , Waseda Research Institute for Science and Engineering, Graduate School of Advanced Science and Engineering, Waseda University, ; 3-4-1 Okubo, Shinjuku-ku, Tokyo 169–8555 Japan
                Author information
                http://orcid.org/0000-0001-6883-6443
                Article
                753
                10.1038/s42003-020-0753-3
                6957511
                31932716
                98e3042d-be5b-402d-964c-c543c6f9de21
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 7 May 2019
                : 23 December 2019
                Funding
                Funded by: FundRef https://doi.org/10.13039/100007428, Naito Foundation;
                Funded by: FundRef https://doi.org/10.13039/100008732, Uehara Memorial Foundation;
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                © The Author(s) 2020

                cellular microbiology,bacterial pathogenesis,bacteriology,macroautophagy

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