20
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Structure‐function analysis of the maize bulliform cell cuticle and its potential role in dehydration and leaf rolling

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The hydrophobic cuticle of plant shoots serves as an important interaction interface with the environment. It consists of the lipid polymer cutin, embedded with and covered by waxes, and provides protection against stresses including desiccation, UV radiation, and pathogen attack. Bulliform cells form in longitudinal strips on the adaxial leaf surface, and have been implicated in the leaf rolling response observed in drought‐stressed grass leaves. In this study, we show that bulliform cells of the adult maize leaf epidermis have a specialized cuticle, and we investigate its function along with that of bulliform cells themselves. Bulliform cells displayed increased shrinkage compared to other epidermal cell types during dehydration of the leaf, providing a potential mechanism to facilitate leaf rolling. Analysis of natural variation was used to relate bulliform strip patterning to leaf rolling rate, providing further evidence of a role for bulliform cells in leaf rolling. Bulliform cell cuticles showed a distinct ultrastructure with increased cuticle thickness compared to other leaf epidermal cells. Comparisons of cuticular conductance between adaxial and abaxial leaf surfaces, and between bulliform‐enriched mutants versus wild‐type siblings, showed a correlation between elevated water loss rates and presence or increased density of bulliform cells, suggesting that bulliform cuticles are more water‐permeable. Biochemical analysis revealed altered cutin composition and increased cutin monomer content in bulliform‐enriched tissues. In particular, our findings suggest that an increase in 9,10‐epoxy‐18‐hydroxyoctadecanoic acid content, and a lower proportion of ferulate, are characteristics of bulliform cuticles. We hypothesize that elevated water permeability of the bulliform cell cuticle contributes to the differential shrinkage of these cells during leaf dehydration, thereby facilitating the function of bulliform cells in stress‐induced leaf rolling observed in grasses.

          Related collections

          Most cited references86

          • Record: found
          • Abstract: found
          • Article: not found

          HISAT: a fast spliced aligner with low memory requirements.

          HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments. HISAT uses an indexing scheme based on the Burrows-Wheeler transform and the Ferragina-Manzini (FM) index, employing two types of indexes for alignment: a whole-genome FM index to anchor each alignment and numerous local FM indexes for very rapid extensions of these alignments. HISAT's hierarchical index for the human genome contains 48,000 local FM indexes, each representing a genomic region of ∼64,000 bp. Tests on real and simulated data sets showed that HISAT is the fastest system currently available, with equal or better accuracy than any other method. Despite its large number of indexes, HISAT requires only 4.3 gigabytes of memory. HISAT supports genomes of any size, including those larger than 4 billion bases.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: found
            Is Open Access

            HTSeq—a Python framework to work with high-throughput sequencing data

            Motivation: A large choice of tools exists for many standard tasks in the analysis of high-throughput sequencing (HTS) data. However, once a project deviates from standard workflows, custom scripts are needed. Results: We present HTSeq, a Python library to facilitate the rapid development of such scripts. HTSeq offers parsers for many common data formats in HTS projects, as well as classes to represent data, such as genomic coordinates, sequences, sequencing reads, alignments, gene model information and variant calls, and provides data structures that allow for querying via genomic coordinates. We also present htseq-count, a tool developed with HTSeq that preprocesses RNA-Seq data for differential expression analysis by counting the overlap of reads with genes. Availability and implementation: HTSeq is released as an open-source software under the GNU General Public Licence and available from http://www-huber.embl.de/HTSeq or from the Python Package Index at https://pypi.python.org/pypi/HTSeq. Contact: sanders@fs.tum.de
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found

              Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

              S Altschul (1997)
              The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantially while enhancing their sensitivity to weak similarities. A new criterion for triggering the extension of word hits, combined with a new heuristic for generating gapped alignments, yields a gapped BLAST program that runs at approximately three times the speed of the original. In addition, a method is introduced for automatically combining statistically significant alignments produced by BLAST into a position-specific score matrix, and searching the database using this matrix. The resulting Position-Specific Iterated BLAST (PSI-BLAST) program runs at approximately the same speed per iteration as gapped BLAST, but in many cases is much more sensitive to weak but biologically relevant sequence similarities. PSI-BLAST is used to uncover several new and interesting members of the BRCT superfamily.
                Bookmark

                Author and article information

                Contributors
                lgsmith@ucsd.edu
                Journal
                Plant Direct
                Plant Direct
                10.1002/(ISSN)2475-4455
                PLD3
                Plant Direct
                John Wiley and Sons Inc. (Hoboken )
                2475-4455
                30 October 2020
                October 2020
                : 4
                : 10 ( doiID: 10.1002/pld3.v4.10 )
                : e00282
                Affiliations
                [ 1 ] Section of Cell and Developmental Biology University of California San Diego La Jolla CA USA
                [ 2 ] Department of Biology Algoma University Sault Ste. Marie ON Canada
                [ 3 ] Howard Hughes Medical Institute University of California San Diego La Jolla CA USA
                [ 4 ] Plant Breeding and Genetics Section School of Integrative Plant Science Cornell University Ithaca NY USA
                [ 5 ]Present address: Department Biochemistry of Plant Interactions Leibniz Institute of Plant Biochemistry Weinberg 3 Halle (Saale) Germany
                [ 6 ]Present address: Department of Genetics, Cell Biology, and Development University of Minnesota Saint Paul MN 55108 USA
                Author notes
                [*] [* ] Correspondence

                Laurie G. Smith, Section of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093, USA.

                Email: lgsmith@ 123456ucsd.edu

                Author information
                https://orcid.org/0000-0001-6233-2519
                https://orcid.org/0000-0002-9502-8801
                https://orcid.org/0000-0001-6896-8024
                https://orcid.org/0000-0003-3450-893X
                https://orcid.org/0000-0002-8294-1589
                Article
                PLD3282
                10.1002/pld3.282
                7598327
                33163853
                9900e752-d09f-4953-8680-ae0d50cc347b
                © 2020 The Authors. Plant Direct published by American Society of Plant Biologists, Society for Experimental Biology and John Wiley & Sons Ltd.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 08 June 2020
                : 15 September 2020
                : 01 October 2020
                Page count
                Figures: 11, Tables: 0, Pages: 21, Words: 28895
                Funding
                Funded by: NSF | BIO | Division of Integrative Organismal Systems (IOS) , open-funder-registry 10.13039/100000154;
                Award ID: IOS1444507
                Funded by: Deutsche Forschungsgemeinschaft (DFG) , open-funder-registry 10.13039/501100001659;
                Award ID: MA‐7608/1‐1
                Funded by: Canada Research Chairs (Chaires de recherche du Canada) , open-funder-registry 10.13039/501100001804;
                Categories
                Original Research
                Original Research
                Custom metadata
                2.0
                October 2020
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.9.3 mode:remove_FC converted:30.10.2020

                bulliform cells,cuticle,drought/water stress,leaf rolling,lipid metabolism,maize,ultrastructure

                Comments

                Comment on this article