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      A Distribution-Free Test of Independence and Its Application to Variable Selection

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          Abstract

          Motivated by the importance of measuring the association between the response and predictors in high dimensional data, In this article, we propose a new mean variance test of independence between a categorical random variable and a continuous one based on mean variance index. The mean variance index is zero if and only if two variables are independent. Under the independence, we derive an explicit form of its asymptotic null distribution, which provides us with an efficient and fast way to compute the empirical p-value in practice. The number of classes of the categorical variable is allowed to diverge slowly to the infinity. It is essentially a rank test and thus distribution-free. No assumption on the distributions of two random variables is required and the test statistic is invariant under one-to-one transformations. It is resistent to heavy-tailed distributions and extreme values. We assess its performance by Monte Carlo simulations and demonstrate that the proposed test achieves a higher power in comparison with the existing tests. We apply the proposed MV test to a high dimensional colon cancer gene expression data to detect the significant genes associated with the tissue syndrome.

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          Asymptotic Theory of Certain "Goodness of Fit" Criteria Based on Stochastic Processes

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            Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.

            Oligonucleotide arrays can provide a broad picture of the state of the cell, by monitoring the expression level of thousands of genes at the same time. It is of interest to develop techniques for extracting useful information from the resulting data sets. Here we report the application of a two-way clustering method for analyzing a data set consisting of the expression patterns of different cell types. Gene expression in 40 tumor and 22 normal colon tissue samples was analyzed with an Affymetrix oligonucleotide array complementary to more than 6,500 human genes. An efficient two-way clustering algorithm was applied to both the genes and the tissues, revealing broad coherent patterns that suggest a high degree of organization underlying gene expression in these tissues. Coregulated families of genes clustered together, as demonstrated for the ribosomal proteins. Clustering also separated cancerous from noncancerous tissue and cell lines from in vivo tissues on the basis of subtle distributed patterns of genes even when expression of individual genes varied only slightly between the tissues. Two-way clustering thus may be of use both in classifying genes into functional groups and in classifying tissues based on gene expression.
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              Measuring and testing dependence by correlation of distances

              Distance correlation is a new measure of dependence between random vectors. Distance covariance and distance correlation are analogous to product-moment covariance and correlation, but unlike the classical definition of correlation, distance correlation is zero only if the random vectors are independent. The empirical distance dependence measures are based on certain Euclidean distances between sample elements rather than sample moments, yet have a compact representation analogous to the classical covariance and correlation. Asymptotic properties and applications in testing independence are discussed. Implementation of the test and Monte Carlo results are also presented.
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                Author and article information

                Journal
                31 January 2018
                Article
                1801.10559
                9a797e40-1b3f-4a82-8349-05c141b4e65a

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

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