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      Regeneration of Escherichia coli from Minicells through Lateral Gene Transfer

      research-article
      a ,
      Journal of Bacteriology
      American Society for Microbiology
      bacterial conjugation, Hfr, regeneration of bacteria, minicells

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          ABSTRACT

          Recently, artificial life has been created with artificial materials and methods. Life can be created when genomic DNA molecules are integrated in liposomes containing biochemical reactions for biogenic needs. However, it is not yet known whether the integration of these parts will be able to occur in nature and constitute a living system. I planned to regenerate bacteria from biologically active liposomes by inserting genomic DNA using only natural materials and methods. Minicells of Escherichia coli, containing plasmids and activated SOS proteins, act as protocells. Four new E. coli strains were regenerated from minicells by inserting the genomes by using the system for conjugation between F and Hfr strains. Cells of the four regenerated strains showed the same genetic markers as the two genome donors. Pulse-field gel electrophoresis of their genomes showed admixing of those of both donors. In addition, the genomes of the four regenerated strains had chimeric genome of the two donors. These results show that synthesis of life can occur in nature without artificial arrangement.

          IMPORTANCE What is the difference between inanimate objects and organisms? Organisms always have genomic DNA. When organisms lose their genomes, they can neither grow nor reproduce. As the result, organisms turn into inanimate objects without their genomes. In this study, I regenerated microbes from cells that had lost their genomes (cell corpses) by inserting another genome. All steps of regeneration used the natural behavior of microbes. The same regeneration of microbes could happen in nature. These primitive lives have plasticity, which accelerates evolution and provides various kinds of life in the world.

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          Most cited references26

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          Viable offspring derived from fetal and adult mammalian cells.

          Fertilization of mammalian eggs is followed by successive cell divisions and progressive differentiation, first into the early embryo and subsequently into all of the cell types that make up the adult animal. Transfer of a single nucleus at a specific stage of development, to an enucleated unfertilized egg, provided an opportunity to investigate whether cellular differentiation to that stage involved irreversible genetic modification. The first offspring to develop from a differentiated cell were born after nuclear transfer from an embryo-derived cell line that had been induced to become quiescent. Using the same procedure, we now report the birth of live lambs from three new cell populations established from adult mammary gland, fetus and embryo. The fact that a lamb was derived from an adult cell confirms that differentiation of that cell did not involve the irreversible modification of genetic material required for development to term. The birth of lambs from differentiated fetal and adult cells also reinforces previous speculation that by inducing donor cells to become quiescent it will be possible to obtain normal development from a wide variety of differentiated cells.
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            Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

            We have synthesized a 582,970-base pair Mycoplasma genitalium genome. This synthetic genome, named M. genitalium JCVI-1.0, contains all the genes of wild-type M. genitalium G37 except MG408, which was disrupted by an antibiotic marker to block pathogenicity and to allow for selection. To identify the genome as synthetic, we inserted "watermarks" at intergenic sites known to tolerate transposon insertions. Overlapping "cassettes" of 5 to 7 kilobases (kb), assembled from chemically synthesized oligonucleotides, were joined by in vitro recombination to produce intermediate assemblies of approximately 24 kb, 72 kb ("1/8 genome"), and 144 kb ("1/4 genome"), which were all cloned as bacterial artificial chromosomes in Escherichia coli. Most of these intermediate clones were sequenced, and clones of all four 1/4 genomes with the correct sequence were identified. The complete synthetic genome was assembled by transformation-associated recombination cloning in the yeast Saccharomyces cerevisiae, then isolated and sequenced. A clone with the correct sequence was identified. The methods described here will be generally useful for constructing large DNA molecules from chemically synthesized pieces and also from combinations of natural and synthetic DNA segments.
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              Sheep cloned by nuclear transfer from a cultured cell line.

              Nuclear transfer has been used in mammals as both a valuable tool in embryological studies and as a method for the multiplication of 'elite' embryos. Offspring have only been reported when early embryos, or embryo-derived cells during primary culture, were used as nuclear donors. Here we provide the first report, to our knowledge, of live mammalian offspring following nuclear transfer from an established cell line. Lambs were born after cells derived from sheep embryos, which had been cultured for 6 to 13 passages, were induced to quiesce by serum starvation before transfer of their nuclei into enucleated oocytes. Induction of quiescence in the donor cells may modify the donor chromatin structure to help nuclear reprogramming and allow development. This approach will provide the same powerful opportunities for analysis and modification of gene function in livestock species that are available in the mouse through the use of embryonic stem cells.
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                Author and article information

                Contributors
                Role: Editor
                Journal
                J Bacteriol
                J. Bacteriol
                jb
                jb
                JB
                Journal of Bacteriology
                American Society for Microbiology (1752 N St., N.W., Washington, DC )
                0021-9193
                1098-5530
                20 February 2018
                9 April 2018
                1 May 2018
                9 April 2018
                : 200
                : 9
                : e00630-17
                Affiliations
                [a ]Japan Agency for Marine-Earth Science & Technology, Yokosuka, Japan
                Michigan State University
                Author notes
                Address correspondence to hidekik@ 123456jamstec.go.jp .

                Citation Kobayashi H. 2018. Regeneration of Escherichia coli from minicells through lateral gene transfer. J Bacteriol 200:e00630-17. https://doi.org/10.1128/JB.00630-17.

                Article
                00630-17
                10.1128/JB.00630-17
                5892112
                29463604
                9aaf289f-696d-42f1-af7a-6e640db1702e
                Copyright © 2018 Kobayashi.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

                History
                : 17 October 2017
                : 7 February 2018
                Page count
                supplementary-material: 1, Figures: 5, Tables: 2, Equations: 0, References: 32, Pages: 10, Words: 5737
                Categories
                Research Article
                Custom metadata
                May 2018

                Microbiology & Virology
                bacterial conjugation,hfr,regeneration of bacteria,minicells
                Microbiology & Virology
                bacterial conjugation, hfr, regeneration of bacteria, minicells

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