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      TensOrMachine: Probabilistic Boolean Tensor Decomposition

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          Abstract

          Boolean tensor decomposition approximates data of multi-way binary relationships as product of interpretable low-rank binary factors, following the rules of Boolean algebra. Here, we present its first probabilistic treatment. We facilitate scalable sampling-based posterior inference by exploitation of the combinatorial structure of the factor conditionals. Maximum a posteriori decompositions feature higher accuracies than existing techniques throughout a wide range of simulated conditions. Moreover, the probabilistic approach facilitates the treatment of missing data and enables model selection with much greater accuracy. We investigate three real-world data-sets. First, temporal interaction networks in a hospital ward and behavioural data of university students demonstrate the inference of instructive latent patterns. Next, we decompose a tensor with more than 10 billion data points, indicating relations of gene expression in cancer patients. Not only does this demonstrate scalability, it also provides an entirely novel perspective on relational properties of continuous data and, in the present example, on the molecular heterogeneity of cancer. Our implementation is available on GitHub: https://github.com/TammoR/LogicalFactorisationMachines.

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          Tensor Decompositions and Applications

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            Estimating Potential Infection Transmission Routes in Hospital Wards Using Wearable Proximity Sensors

            Background Contacts between patients, patients and health care workers (HCWs) and among HCWs represent one of the important routes of transmission of hospital-acquired infections (HAI). A detailed description and quantification of contacts in hospitals provides key information for HAIs epidemiology and for the design and validation of control measures. Methods and Findings We used wearable sensors to detect close-range interactions (“contacts”) between individuals in the geriatric unit of a university hospital. Contact events were measured with a spatial resolution of about 1.5 meters and a temporal resolution of 20 seconds. The study included 46 HCWs and 29 patients and lasted for 4 days and 4 nights. 14,037 contacts were recorded overall, 94.1% of which during daytime. The number and duration of contacts varied between mornings, afternoons and nights, and contact matrices describing the mixing patterns between HCW and patients were built for each time period. Contact patterns were qualitatively similar from one day to the next. 38% of the contacts occurred between pairs of HCWs and 6 HCWs accounted for 42% of all the contacts including at least one patient, suggesting a population of individuals who could potentially act as super-spreaders. Conclusions Wearable sensors represent a novel tool for the measurement of contact patterns in hospitals. The collected data can provide information on important aspects that impact the spreading patterns of infectious diseases, such as the strong heterogeneity of contact numbers and durations across individuals, the variability in the number of contacts during a day, and the fraction of repeated contacts across days. This variability is however associated with a marked statistical stability of contact and mixing patterns across days. Our results highlight the need for such measurement efforts in order to correctly inform mathematical models of HAIs and use them to inform the design and evaluation of prevention strategies.
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              Patterns of behavior change in students over an academic term: A preliminary study of activity and sociability behaviors using smartphone sensing methods

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                Author and article information

                Journal
                11 May 2018
                Article
                1805.04582
                9b77c006-1c5b-4243-a908-7c1548754a7a

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

                History
                Custom metadata
                To be published at ICML 2018
                stat.ML cs.AI cs.LG q-bio.GN stat.AP

                Applications,Machine learning,Artificial intelligence,Genetics
                Applications, Machine learning, Artificial intelligence, Genetics

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