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      Structure of the outer membrane complex of a type IV secretion system

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          Abstract

          Type IV secretion systems are secretion nanomachines spanning the two membranes of Gram-negative bacteria. Three proteins, VirB7, VirB9, and VirB10 assemble into a 1.05 MDa core spanning the inner and outer membranes. This core consists of 14 copies of each of the proteins and forms two layers, the I and O layers, inserting in the inner and outer membrane, respectively. Here we present the crystal structure of a ~0.6 MDa outer membrane complex containing the entire O-layer. This structure is the largest determined for an outer membrane channel and is also unprecedented in being composed of three proteins. Unexpectedly, this structure identifies VirB10 as the outer membrane channel with a unique hydrophobic double helical trans-membrane region. This structure establishes VirB10 as the only known protein crossing both membranes of Gram-negative bacteria. Comparison of the cryo-EM and crystallographic structures point to conformational changes regulating channel opening and closing.

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          Most cited references30

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          Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

          W Kabsch (1993)
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            AMoRe: an automated package for molecular replacement

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              Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export.

              Diverse molecules, from small antibacterial drugs to large protein toxins, are exported directly across both cell membranes of gram-negative bacteria. This export is brought about by the reversible interaction of substrate-specific inner-membrane proteins with an outer-membrane protein of the TolC family, thus bypassing the intervening periplasm. Here we report the 2.1-A crystal structure of TolC from Escherichia coli, revealing a distinctive and previously unknown fold. Three TolC protomers assemble to form a continuous, solvent-accessible conduit--a 'channel-tunnel' over 140 A long that spans both the outer membrane and periplasmic space. The periplasmic or proximal end of the tunnel is sealed by sets of coiled helices. We suggest these could be untwisted by an allosteric mechanism, mediated by protein-protein interactions, to open the tunnel. The structure provides an explanation of how the cell cytosol is connected to the external environment during export, and suggests a general mechanism for the action of bacterial efflux pumps.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                27 October 2009
                29 November 2009
                24 December 2009
                24 June 2010
                : 462
                : 7276
                : 1011-1015
                Affiliations
                [1 ]Institute of Structural and Molecular Biology, University College London and Birkbeck College, Malet Street, London WC1E 7HX, United Kingdom
                [2 ]Institut Pasteur, Unité de Virologie Structurale, Virology Department and CNRS URA 3015, Paris, France
                [3 ]Laboratoire de Microscopie Electronique, Institut de Biologie Structurale J.P. Ebel, 41 rue Jules Horowitz, F-38027 Grenoble Cedex 1, France.
                Author notes
                [* ]Corresponding author: Gabriel Waksman, Institute of Structural and Molecular Biology at UCL and Birkbeck, Birkbeck College, Malet Street, London WC1E 7HX, United Kingdom Tel: +44 (0) 207 631 6833; Fax: +44 (0) 207 631 6833; g.waksman@ 123456bbk.ac.uk or g.waksman@ 123456ucl.ac.uk
                [&]

                These authors contributed equally.

                Author contribution statement. V.C. produced the complex, optimized crystals, built, refined and analysed the structure. R.F. designed the purification protocol, produced the complex, grew the first crystals, optimized crystals and analysed the structure. S.D. and J.N. solved the structure by molecular replacement and provided the electron density map. N.C. collected crystallographic data. G.W. supervised the work, analysed the structure and wrote the paper.

                Article
                UKMS27970
                10.1038/nature08588
                2797999
                19946264
                9d4e8163-01c6-4d05-8a27-adeed89e412d

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                History
                Funding
                Funded by: Wellcome Trust :
                Award ID: 082227 || WT
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