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      Access to Geosciences – Ways and Means to share and publish collection data

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      Research Ideas and Outcomes
      Pensoft Publishers

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          Abstract

          Natural history collections are invaluable tools for various questions regarding biodiversity, environmental, and cultural studies. All object metadata thus need to be findable, reachable and interoperable for the scientific community and beyond. This requires a good structuration of data, appropriate exchange formats, and web sites or portals making all necessary information accessible. Collection managers, curators, and scientist from various institutions and nationalities were surveyed in order to understand the importance of open geoscientific collections for the respective holding institution and their daily work. In addition, particular requirements for the publication of geoscientific collection object metadata were gathered in a two-day workshop with international experts working with paleontological, mineralogical, petrological and meteorite collections. The survey and workshop revealed that common data standards are of crucial importance though insufficiently used by most institutions. The extent and type of information necessary for the publication and discussed during the workshop will be considered for domain specific application schema facilitating the publication and exchange of geoscientific object metadata. There is a high demand for comprehensive data portals covering all geoscientific disciplines. Gathered portal requirements will be taken into account when improving the already running GeoCASe aggregator platform.

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          History and development of ABCDEFG: a data standard for geosciences

          Museums and their collections have specially customized databases in order to optimally gather and record their contents and associated metadata associated with their specimens. To share, exchange, and publish data, an appropriate data standard is essential. ABCD (Access to Biological Collection Data) is a standard for biological collection units, including living and preserved specimen, together with field observation data. Its extension, EFG (Extension for Geoscience), enables sharing and publishing data related to paleontological, mineralogical, and petrological objects. The standard is very granular and allows detailed descriptions, including information about the collection event itself, the holding institution, stratigraphy, chemical analysis, and host rock. The standard extension was developed in 2006 and has been used since then by different initiatives and applied for the publication of collection-related data in domain-specific and interdisciplinary portals.
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            The BioCASe Monitor Service - A tool for monitoring progress and quality of data provision through distributed data networks

            Abstract The BioCASe Monitor Service (BMS) is a web-based tool for coordinators of distributed data networks that provide information to web-portals and data aggregators via the BioCASe Provider Software. Building on common standards and protocols, it has three main purposes: (1) monitoring provider’s progress in data provision, (2) facilitating checks of data mappings with a focus on the structure, plausibility and completeness, and (3) verifying compliance of provided data for transformation into other target schemas. Herein two use cases, GBIF-D and OpenUp!, are presented in which the BMS is being applied for monitoring the progress in data provision and performing quality checks on the ABCD (Access to Biological Collection Data) schema mapping. However, the BMS can potentially be used with any conceptual data schema and protocols for querying web services. Through flexible configuration options it is highly adaptable to specific requirements and needs. Thus, the BMS can be easily implemented into coordination workflows and reporting duties within other distributed data network projects.
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              Author and article information

              Journal
              Research Ideas and Outcomes
              RIO
              Pensoft Publishers
              2367-7163
              January 11 2019
              January 11 2019
              : 5
              Article
              10.3897/rio.5.e32987
              9df0a303-a25b-47e9-b585-10320535f844
              © 2019

              http://creativecommons.org/licenses/by/4.0/

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