Grigorii A. Sukhorukov: Role: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SoftwareRole: VisualizationRole: Writing – original draft
Alexey I. Paramonov: Role: InvestigationRole: Resources
Oksana V. Lisak: Role: InvestigationRole: Resources
Irina V. Kozlova: Role: InvestigationRole: Resources
Georgii A. Bazykin:
ORCID: https://orcid.org/0000-0003-2334-2751
Role: ConceptualizationRole: Funding acquisitionRole: InvestigationRole: MethodologyRole:
Project administrationRole: SupervisionRole: Writing – review & editing
Alexey D. Neverov: Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole:
SupervisionRole: Writing – review & editing
Lyudmila S. Karan: Role: InvestigationRole: ResourcesRole: Writing – review & editing
Wen-Ping Guo: Role: Editor
Journal ID (nlm-ta): PLoS Negl Trop Dis
Journal ID (iso-abbrev): PLoS Negl Trop Dis
Journal ID (publisher-id): plos
Title:
PLOS Neglected Tropical Diseases
Publisher:
Public Library of Science
(San Francisco, CA USA
)
ISSN
(Print):
1935-2727
ISSN
(Electronic):
1935-2735
Publication date
(Electronic):
27
March
2023
Publication date Collection:
March
2023
Volume: 17
Issue: 3
Electronic Location Identifier: e0011141
Affiliations
[1
]
Center of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Russia
[2
]
Laboratory of molecular Epidemiology and genetic diagnosis, Scientific Centre for
Family Health and Human Reproduction Problems, Irkutsk, Russia
[3
]
Laboratory of Molecular Evolution, Kharkevich Institute for Information Transmission
Problems of the RAS, Moscow, Russia
[4
]
HSE University, Moscow, Russia
[5
]
Department of Molecular Diagnostics, Central Research Institute for Epidemiology,
Moscow, Russia
Chengde Medical University, CHINA
Author notes
The authors have declared that no competing interests exist.
Author information
Article
Publisher ID:
PNTD-D-22-00754
DOI: 10.1371/journal.pntd.0011141
PMC ID: 10079218
PubMed ID: 36972237
SO-VID: 9eec7be3-aba8-4b22-a673-3b3748d5d83f
Copyright © © 2023 Sukhorukov et al
License:
This is an open access article distributed under the terms of the
Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided
the original author and source are credited.
Funded by:
Russian Science Foundation
Award ID: 21-74-20160
Award Recipient
:
ORCID: https://orcid.org/0000-0003-2334-2751
Georgii A. Bazykin
Funded by:
HSE University Basic Research Program
Award Recipient
:
Alexey D. Neverov
This work was funded by the Russian Science Foundation (project no. 21-74-20160 to
G.A.B.). A.D.N. was partially supported by the HSE University Basic Research Program.
The funders had no role in study design, data collection and analysis, decision to
publish, or preparation of the manuscript.
Subject:
Research Article
Subject:
Research and Analysis Methods
Subject:
Database and Informatics Methods
Subject:
Bioinformatics
Subject:
Sequence Analysis
Subject:
Sequence Alignment
Subject:
Biology and Life Sciences
Subject:
Evolutionary Biology
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Evolutionary Systematics
Subject:
Phylogenetics
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Biology and Life Sciences
Subject:
Taxonomy
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Evolutionary Systematics
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Phylogenetics
Subject:
Computer and Information Sciences
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Data Management
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Taxonomy
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Evolutionary Systematics
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Phylogenetics
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Biology and Life Sciences
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Evolutionary Biology
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Evolutionary Systematics
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Phylogenetics
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Phylogenetic Analysis
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Biology and Life Sciences
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Taxonomy
Subject:
Evolutionary Systematics
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Phylogenetics
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Phylogenetic Analysis
Subject:
Computer and Information Sciences
Subject:
Data Management
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Taxonomy
Subject:
Evolutionary Systematics
Subject:
Phylogenetics
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Phylogenetic Analysis
Subject:
Biology and Life Sciences
Subject:
Genetics
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Genomics
Subject:
Research and Analysis Methods
Subject:
Computational Techniques
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Split-Decomposition Method
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Multiple Alignment Calculation
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Biology and Life Sciences
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Evolutionary Biology
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Evolutionary Systematics
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Phylogenetics
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Animal Phylogenetics
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Biology and Life Sciences
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Taxonomy
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Evolutionary Systematics
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Phylogenetics
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Animal Phylogenetics
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Computer and Information Sciences
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Data Management
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Taxonomy
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Evolutionary Systematics
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Phylogenetics
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Animal Phylogenetics
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Biology and Life Sciences
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Zoology
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Animal Phylogenetics
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Biology and life sciences
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Genetics
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DNA
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DNA recombination
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Biology and life sciences
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Biochemistry
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Nucleic acids
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DNA
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DNA recombination
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Biology and life sciences
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Organisms
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Viruses
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RNA viruses
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Flaviviruses
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Tick-Borne Encephalitis Virus
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Biology and Life Sciences
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Microbiology
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Medical Microbiology
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Microbial Pathogens
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Viral Pathogens
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Flaviviruses
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Tick-Borne Encephalitis Virus
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Medicine and Health Sciences
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Pathology and Laboratory Medicine
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Pathogens
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Microbial Pathogens
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Viral Pathogens
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Flaviviruses
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Tick-Borne Encephalitis Virus
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Biology and Life Sciences
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Organisms
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Viruses
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Viral Pathogens
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Flaviviruses
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Tick-Borne Encephalitis Virus