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      Metal–Dithiolene Bonding Contributions to Pyranopterin Molybdenum Enzyme Reactivity

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          Abstract

          Here we highlight past work on metal-dithiolene interactions and how the unique electronic structure of the metal-dithiolene unit contributes to both the oxidative and reductive half reactions in pyranopterin molybdenum and tungsten enzymes. The metallodithiolene electronic structures detailed here were interrogated using multiple ground and excited state spectroscopic probes on the enzymes and their small molecule analogs. The spectroscopic results have been interpreted in the context of bonding and spectroscopic calculations, and the pseudo-Jahn-Teller effect. The dithiolene is a unique ligand with respect to its redox active nature, electronic synergy with the pyranopterin component of the molybdenum cofactor, and the ability to undergo chelate ring distortions that control covalency, reduction potential, and reactivity in pyranopterin molybdenum and tungsten enzymes.

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          The physiology and habitat of the last universal common ancestor.

          The concept of a last universal common ancestor of all cells (LUCA, or the progenote) is central to the study of early evolution and life's origin, yet information about how and where LUCA lived is lacking. We investigated all clusters and phylogenetic trees for 6.1 million protein coding genes from sequenced prokaryotic genomes in order to reconstruct the microbial ecology of LUCA. Among 286,514 protein clusters, we identified 355 protein families (∼0.1%) that trace to LUCA by phylogenetic criteria. Because these proteins are not universally distributed, they can shed light on LUCA's physiology. Their functions, properties and prosthetic groups depict LUCA as anaerobic, CO2-fixing, H2-dependent with a Wood-Ljungdahl pathway, N2-fixing and thermophilic. LUCA's biochemistry was replete with FeS clusters and radical reaction mechanisms. Its cofactors reveal dependence upon transition metals, flavins, S-adenosyl methionine, coenzyme A, ferredoxin, molybdopterin, corrins and selenium. Its genetic code required nucleoside modifications and S-adenosyl methionine-dependent methylations. The 355 phylogenies identify clostridia and methanogens, whose modern lifestyles resemble that of LUCA, as basal among their respective domains. LUCA inhabited a geochemically active environment rich in H2, CO2 and iron. The data support the theory of an autotrophic origin of life involving the Wood-Ljungdahl pathway in a hydrothermal setting.
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              Structure and chemistry of bis(cyclopentadienyl)-MLn complexes

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                Author and article information

                Journal
                101733574
                47977
                Inorganics (Basel)
                Inorganics (Basel)
                Inorganics
                2304-6740
                5 February 2021
                5 March 2020
                March 2020
                28 July 2021
                : 8
                : 3
                : 19
                Affiliations
                [1 ]Department of Chemistry and Chemical Biology, The University of New Mexico, MSC03 2060, Albuquerque, NM 87131-0001, USA;
                [2 ]Department of Chemistry Biochemistry, University of Arizona, Tucson, AZ 85721, USA;
                Author notes

                Author Contributions: J.H.E., J.Y., and M.L.K. collectively conceived and drafted this article. All authors have read and agreed to the published version of the manuscript.

                [* ]Correspondence: mkirk@ 123456unm.edu ; Tel.: +1-505-277-5992
                Author information
                http://orcid.org/0000-0001-8241-9160
                http://orcid.org/0000-0002-5272-3652
                http://orcid.org/0000-0002-1479-3318
                Article
                NIHMS1670612
                10.3390/inorganics8030019
                8318340
                34327225
                9f2ed369-1bf1-4f12-838d-3c784b5685a9

                This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

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                Article

                metal-dithiolene,pyranopterin molybdenum enzymes,fold-angle,tungsten enzymes,electronic structure,pseudo-jahn-teller effect,thione,molybdenum cofactor,moco

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