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      Enhancing quality in Diffusion Tensor Imaging with anisotropic anomalous diffusion filter

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          Abstract

          Abstract Introduction: Diffusion tensor imaging (DTI) is an important medical imaging modality that has been useful to the study of microstructural changes in neurological diseases. However, the image noise level is a major practical limitation, in which one simple solution could be the average signal from a sequential acquisition. Nevertheless, this approach is time-consuming and is not often applied in the clinical routine. In this study, we aim to evaluate the anisotropic anomalous diffusion (AAD) filter in order to improve the general image quality of DTI. Methods A group of 20 healthy subjects with DTI data acquired (3T MR scanner) with different numbers of averages (N=1,2,4,6,8, and 16), where they were submitted to 2-D AAD and conventional anisotropic diffusion filters. The Relative Mean Error (RME), Structural Similarity Index (SSIM), Coefficient of Variation (CV) and tractography reconstruction were evaluated on Fractional Anisotropy (FA) and Apparent Diffusion Coefficient (ADC) maps. Results The results point to an improvement of up to 30% of CV, RME, and SSIM for the AAD filter, while up to 14% was found for the conventional AD filter (p<0.05). The tractography revealed a better estimative in fiber counting, where the AAD filter resulted in less FA variability. Furthermore, the AAD filter showed a quality improvement similar to a higher average approach, i.e. achieving an image quality equivalent to what was seen in two additional acquisitions. Conclusions In general, the AAD filter showed robustness in noise attenuation and global image quality improvement even in DTI images with high noise level.

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          FSL.

          FSL (the FMRIB Software Library) is a comprehensive library of analysis tools for functional, structural and diffusion MRI brain imaging data, written mainly by members of the Analysis Group, FMRIB, Oxford. For this NeuroImage special issue on "20 years of fMRI" we have been asked to write about the history, developments and current status of FSL. We also include some descriptions of parts of FSL that are not well covered in the existing literature. We hope that some of this content might be of interest to users of FSL, and also maybe to new research groups considering creating, releasing and supporting new software packages for brain image analysis. Copyright © 2011 Elsevier Inc. All rights reserved.
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            Diffusion MRI of complex neural architecture.

            While functional brain imaging methods can locate the cortical regions subserving particular cognitive functions, the connectivity between the functional areas of the human brain remains poorly understood. Recently, investigators have proposed a method to image neural connectivity noninvasively using a magnetic resonance imaging method called diffusion tensor imaging (DTI). DTI measures the molecular diffusion of water along neural pathways. Accurate reconstruction of neural connectivity patterns from DTI has been hindered, however, by the inability of DTI to resolve more than a single axon direction within each imaging voxel. Here, we present a novel magnetic resonance imaging technique that can resolve multiple axon directions within a single voxel. The technique, called q-ball imaging, can resolve intravoxel white matter fiber crossing as well as white matter insertions into cortex. The ability of q-ball imaging to resolve complex intravoxel fiber architecture eliminates a key obstacle to mapping neural connectivity in the human brain noninvasively.
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              Perceptual visual quality metrics: A survey

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                Author and article information

                Contributors
                Role: ND
                Role: ND
                Role: ND
                Role: ND
                Journal
                reng
                Research on Biomedical Engineering
                Res. Biomed. Eng.
                Sociedade Brasileira de Engenharia Biomédica (Rio de Janeiro, RJ, Brazil )
                2446-4732
                2446-4740
                September 2017
                : 33
                : 3
                : 247-258
                Affiliations
                [03] Ribeirão Preto orgnameUniversidade de São Paulo orgdiv1Department of Medical Clinics Brazil
                [01] Ribeirão Preto orgnameUniversidade de São Paulo orgdiv1Department of Computing and Mathematics Brazil
                [02] Ribeirão Preto orgnameUniversidade de São Paulo orgdiv1Department of Physics Brazil
                Article
                S2446-47402017000300247
                10.1590/2446-4740.02017
                9f9c86ba-c567-4bef-a28c-c2a1b8acf9cb

                This work is licensed under a Creative Commons Attribution 4.0 International License.

                History
                : 25 April 2017
                : 14 August 2017
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 40, Pages: 12
                Product

                SciELO Brazil


                Anomalous diffusion,Image enhancement,Diffusion Tensor Imaging,Spatial filtering

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