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      Cross-correlation analysis of X-ray photon correlation spectroscopy to extract rotational diffusion coefficients

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          Significance

          X-ray photon correlation spectroscopy (XPCS) is a powerful technique that can probe a broad range of space and time scales and will become increasingly powerful due to coming advancements in coherence. Assessing translational and rotational diffusion is a key quantity in analyzing material structures and dynamics, with applications across molecular biology, drug discovery, and materials science. While methods for estimating translational diffusion coefficients from XPCS data are well-developed, there are no algorithms for measuring the rotational diffusion. Here, we present a mathematical formulation and algorithm based on angular-temporal cross-correlations for extracting this rotational information, providing tools for data analysis of XPCS. Although we focus on XPCS, the proposed method can be applied to other experimental techniques due to its generality.

          Abstract

          Coefficients for translational and rotational diffusion characterize the Brownian motion of particles. Emerging X-ray photon correlation spectroscopy (XPCS) experiments probe a broad range of length scales and time scales and are well-suited for investigation of Brownian motion. While methods for estimating the translational diffusion coefficients from XPCS are well-developed, there are no algorithms for measuring the rotational diffusion coefficients based on XPCS, even though the required raw data are accessible from such experiments. In this paper, we propose angular-temporal cross-correlation analysis of XPCS data and show that this information can be used to design a numerical algorithm (Multi-Tiered Estimation for Correlation Spectroscopy [MTECS]) for predicting the rotational diffusion coefficient utilizing the cross-correlation: This approach is applicable to other wavelengths beyond this regime. We verify the accuracy of this algorithmic approach across a range of simulated data.

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          Most cited references30

          • Record: found
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          Communication in the Presence of Noise

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            • Record: found
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            • Article: not found

            Analysis of individual differences in multidimensional scaling via an n-way generalization of “Eckart-Young” decomposition

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              • Record: found
              • Abstract: not found
              • Article: not found

              A Limited Memory Algorithm for Bound Constrained Optimization

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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc Natl Acad Sci U S A
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                24 August 2021
                18 August 2021
                18 August 2021
                : 118
                : 34
                : e2105826118
                Affiliations
                [1] aDepartment of Mathematics, University of California, Berkeley , CA 94720;
                [2] bCenter for Advanced Mathematics for Energy Research Applications, Lawrence Berkeley National Laboratory , Berkeley, CA 94720;
                [3] cMathematics Department, Lawrence Berkeley National Laboratory , Berkeley, CA 94720
                Author notes
                1To whom correspondence may be addressed. Email: zixihu@ 123456berkeley.edu or sethian@ 123456math.berkeley.edu .

                Contributed by James A. Sethian, June 14, 2021 (sent for review March 26, 2021; reviewed by Mark Sutton and Lutz Wiegart)

                Author contributions: Z.H., J.J.D., and J.A.S. designed research, performed research, contributed new reagents/analytic tools, analyzed data, and wrote the paper.

                Reviewers: M.S., McGill University; and L.W., European Synchrotron Radiation Facility.

                Author information
                http://orcid.org/0000-0002-5365-7351
                Article
                202105826
                10.1073/pnas.2105826118
                8403868
                34408023
                a11d0f18-a789-4285-a832-c3d015637d78
                Copyright © 2021 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                Page count
                Pages: 7
                Funding
                Funded by: US Department of Energy
                Award ID: DE-AC02-42905CH1123
                Award Recipient : Zixi Hu Award Recipient : Jeffrey J Donatelli Award Recipient : James A. Sethian
                Categories
                404
                Physical Sciences
                Applied Mathematics

                x-ray photon correlation spectroscopy,correlation spectroscopy,speckle pattern analysis,angular cross-correlation,rotational diffusion

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