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      Agaricus meleagris pyranose dehydrogenase: Influence of covalent FAD linkage on catalysis and stability

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          Highlights

          • The mutation H103Y slowed down the reductive half-reaction by three orders of magnitude.

          • Secondary structure composition was not altered according to CD spectra.

          • EPR spectroscopy identified a semiquinone radical in the wild-type and variant H103Y.

          • Thermal and conformational stability was negatively affected by the mutation.

          Abstract

          Pyranose dehydrogenase (PDH) is a monomeric flavoprotein belonging to the glucose–methanol–choline (GMC) family of oxidoreductases. It catalyzes the oxidation of free, non-phosphorylated sugars to the corresponding keto sugars. The enzyme harbors an FAD cofactor that is covalently attached to histidine 103 via an 8α-N(3) histidyl linkage. Our previous work showed that variant H103Y was still able to bind FAD (non-covalently) and perform catalysis but steady-state kinetic parameters for several substrates were negatively affected. In order to investigate the impact of the covalent FAD attachment in Agaricus meleagris PDH in more detail, pre-steady-state kinetics, reduction potential and stability of the variant H103Y in comparison to the wild-type enzyme were probed. Stopped-flow analysis revealed that the mutation slowed down the reductive half-reaction by around three orders of magnitude whereas the oxidative half-reaction was affected only to a minor degree. This was reflected by a decrease in the standard reduction potential of variant H103Y compared to the wild-type protein. The existence of an anionic semiquinone radical in the resting state of both the wild-type and variant H103Y was demonstrated using electron paramagnetic resonance (EPR) spectroscopy and suggested a higher mobility of the cofactor in the variant H103Y. Unfolding studies showed significant negative effects of the disruption of the covalent bond on thermal and conformational stability. The results are discussed with respect to the role of covalently bound FAD in catalysis and stability.

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          Most cited references33

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          EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.

          EasySpin, a computational package for spectral simulation and analysis in EPR, is described. It is based on Matlab, a commercial technical computation software. EasySpin provides extensive EPR-related functionality, ranging from elementary spin physics to data analysis. In addition, it provides routines for the simulation of liquid- and solid-state EPR and ENDOR spectra. These simulation functions are built on a series of novel algorithms that enhance scope, speed and accuracy of spectral simulations. Spin systems with an arbitrary number of electron and nuclear spins are supported. The structure of the toolbox as well as the theoretical background underlying its simulation functionality are presented, and some illustrative examples are given.
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            High-density miniaturized thermal shift assays as a general strategy for drug discovery.

            More general and universally applicable drug discovery assay technologies are needed in order to keep pace with the recent advances in combinatorial chemistry and genomics-based target generation. Ligand-induced conformational stabilization of proteins is a well-understood phenomenon in which substrates, inhibitors, cofactors, and even other proteins provide enhanced stability to proteins on binding. This phenomenon is based on the energetic coupling of the ligand-binding and protein-melting reactions. In an attempt to harness these biophysical properties for drug discovery, fully automated instrumentation was designed and implemented to perform miniaturized fluorescence-based thermal shift assays in a microplate format for the high throughput screening of compound libraries. Validation of this process and instrumentation was achieved by investigating ligand binding to more than 100 protein targets. The general applicability of the thermal shift screening strategy was found to be an important advantage because it circumvents the need to design and retool new assays with each new therapeutic target. Moreover, the miniaturized thermal shift assay methodology does not require any prior knowledge of a therapeutic target's function, making it ideally suited for the quantitative high throughput drug screening and evaluation of targets derived from genomics.
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              ThermoFAD, a Thermofluor-adapted flavin ad hoc detection system for protein folding and ligand binding.

              In living organisms, genes encoding proteins that contain flavins as a prosthetic group constitute approximately 2-3% of the total. The fluorescence of flavin cofactors in these proteins is a property that is widely employed for biochemical characterisation. Here, we present a modified Thermofluor approach called ThermoFAD (Thermofluor-adapted flavin ad hoc detection system), which simplifies identification of optimal purification and storage conditions as well as high-affinity ligands. In this technique, the flavin cofactor is used as an intrinsic probe to monitor protein folding and stability, taking advantage of the different fluorescent properties of flavin-containing proteins between the folded and denatured state. The main advantage of the method is that it allows a large amount of biochemical data to be obtained using very small amounts of protein sample and standard laboratory equipment. We have explored several cases that demonstrate the reliability and versatility of this technique when applied to globular flavoenzymes, membrane-anchored flavoproteins, and macromolecular complexes. The information gathered from ThermoFAD analysis can be very valuable for any biochemical and biophysical analysis, including crystallisation. The method is likely to be applicable to other classes of proteins that possess endogenous fluorescent cofactors and prosthetic groups.
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                Author and article information

                Contributors
                Journal
                Arch Biochem Biophys
                Arch. Biochem. Biophys
                Archives of Biochemistry and Biophysics
                Academic Press
                0003-9861
                1096-0384
                15 September 2014
                15 September 2014
                : 558
                : 100
                : 111-119
                Affiliations
                [a ]Department of Food Science and Technology, Food Biotechnology Laboratory, BOKU – University of Natural Resources and Life Sciences, Muthgasse 11, 1190 Vienna, Austria
                [b ]Department of Chemistry, Division of Biochemistry, BOKU – University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
                Author notes
                [* ]Corresponding author. Fax: +43 1 47654 6199. clemens.peterbauer@ 123456boku.ac.at
                Article
                S0003-9861(14)00251-3
                10.1016/j.abb.2014.07.008
                4148704
                25043975
                a147d3c5-0ea8-4c85-94b5-51d4723eac17
                © 2014 The Authors
                History
                : 24 March 2014
                : 4 July 2014
                Categories
                Article

                Biochemistry
                pyranose dehydrogenase,covalent flavinylation,fad,thermal stability,conformational stability,semiquinone radical

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