184
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: not found

      Lesion identification using unified segmentation-normalisation models and fuzzy clustering

      research-article

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          In this paper, we propose a new automated procedure for lesion identification from single images based on the detection of outlier voxels. We demonstrate the utility of this procedure using artificial and real lesions. The scheme rests on two innovations: First, we augment the generative model used for combined segmentation and normalization of images, with an empirical prior for an atypical tissue class, which can be optimised iteratively. Second, we adopt a fuzzy clustering procedure to identify outlier voxels in normalised gray and white matter segments. These two advances suppress misclassification of voxels and restrict lesion identification to gray/white matter lesions respectively. Our analyses show a high sensitivity for detecting and delineating brain lesions with different sizes, locations, and textures. Our approach has important implications for the generation of lesion overlap maps of a given population and the assessment of lesion-deficit mappings. From a clinical perspective, our method should help to compute the total volume of lesion or to trace precisely lesion boundaries that might be pertinent for surgical or diagnostic purposes.

          Related collections

          Most cited references61

          • Record: found
          • Abstract: not found
          • Article: not found

          Unified segmentation

            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Stereotaxic display of brain lesions.

            Traditionally lesion location has been reported using standard templates, text based descriptions or representative raw slices from the patient's CT or MRI scan. Each of these methods has drawbacks for the display of neuroanatomical data. One solution is to display MRI scans in the same stereotaxic space popular with researchers working in functional neuroimaging. Presenting brains in this format is useful as the slices correspond to the standard anatomical atlases used by neuroimagers. In addition, lesion position and volume are directly comparable across patients. This article describes freely available software for presenting stereotaxically aligned patient scans. This article focuses on MRI scans, but many of these tools are also applicable to other modalities (e.g. CT, PET and SPECT). We suggest that this technique of presenting lesions in terms of images normalized to standard stereotaxic space should become the standard for neuropsychological studies.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: not found
              Is Open Access

              Spatial normalization of lesioned brains: Performance evaluation and impact on fMRI analyses

              A key component of group analyses of neuroimaging data is precise and valid spatial normalization (i.e., inter-subject image registration). When patients have structural brain lesions, such as a stroke, this process can be confounded by the lack of correspondence between the subject and standardized template images. Current procedures for dealing with this problem include regularizing the estimate of warping parameters used to match lesioned brains to the template, or “cost function masking”; both these solutions have significant drawbacks. We report three experiments that identify the best spatial normalization for structurally damaged brains and establish whether differences among normalizations have a significant effect on inferences about functional activations. Our novel protocols evaluate the effects of different normalization solutions and can be applied easily to any neuroimaging study. This has important implications for users of both structural and functional imaging techniques in the study of patients with structural brain damage.
                Bookmark

                Author and article information

                Journal
                Neuroimage
                Neuroimage
                Academic Press
                1053-8119
                1095-9572
                15 July 2008
                15 July 2008
                : 41
                : 4-3
                : 1253-1266
                Affiliations
                Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL, London UK
                Author notes
                [* ]Corresponding author. Wellcome Trust Centre for Neuroimaging, Institute of Neurology, 12 Queen Square, London WC1N 3BG, UK. Fax: +44 20 7813 1420. m.seghier@ 123456fil.ion.ucl.ac.uk
                Article
                YNIMG5341
                10.1016/j.neuroimage.2008.03.028
                2724121
                18482850
                a2862954-b202-467e-aac7-a0de72e59b9c
                © 2008 Elsevier Inc.

                This document may be redistributed and reused, subject to certain conditions.

                History
                : 14 December 2007
                : 13 March 2008
                : 17 March 2008
                Categories
                Article

                Neurosciences
                gray matter,structural mri,lesion identification,outlier detection,white matter,fuzzy clustering,oedema,segmentation

                Comments

                Comment on this article