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      Modeling Brain Dynamics in Brain Tumor Patients Using the Virtual Brain

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          Abstract

          Presurgical planning for brain tumor resection aims at delineating eloquent tissue in the vicinity of the lesion to spare during surgery. To this end, noninvasive neuroimaging techniques such as functional MRI and diffusion-weighted imaging fiber tracking are currently employed. However, taking into account this information is often still insufficient, as the complex nonlinear dynamics of the brain impede straightforward prediction of functional outcome after surgical intervention. Large-scale brain network modeling carries the potential to bridge this gap by integrating neuroimaging data with biophysically based models to predict collective brain dynamics. As a first step in this direction, an appropriate computational model has to be selected, after which suitable model parameter values have to be determined. To this end, we simulated large-scale brain dynamics in 25 human brain tumor patients and 11 human control participants using The Virtual Brain, an open-source neuroinformatics platform. Local and global model parameters of the Reduced Wong–Wang model were individually optimized and compared between brain tumor patients and control subjects. In addition, the relationship between model parameters and structural network topology and cognitive performance was assessed. Results showed (1) significantly improved prediction accuracy of individual functional connectivity when using individually optimized model parameters; (2) local model parameters that can differentiate between regions directly affected by a tumor, regions distant from a tumor, and regions in a healthy brain; and (3) interesting associations between individually optimized model parameters and structural network topology and cognitive performance.

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          Most cited references33

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          Community structure in social and biological networks

          A number of recent studies have focused on the statistical properties of networked systems such as social networks and the World-Wide Web. Researchers have concentrated particularly on a few properties which seem to be common to many networks: the small-world property, power-law degree distributions, and network transitivity. In this paper, we highlight another property which is found in many networks, the property of community structure, in which network nodes are joined together in tightly-knit groups between which there are only looser connections. We propose a new method for detecting such communities, built around the idea of using centrality indices to find community boundaries. We test our method on computer generated and real-world graphs whose community structure is already known, and find that it detects this known structure with high sensitivity and reliability. We also apply the method to two networks whose community structure is not well-known - a collaboration network and a food web - and find that it detects significant and informative community divisions in both cases.
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            Efficient Behavior of Small-World Networks

            We introduce the concept of efficiency of a network, measuring how efficiently it exchanges information. By using this simple measure small-world networks are seen as systems that are both globally and locally efficient. This allows to give a clear physical meaning to the concept of small-world, and also to perform a precise quantitative a nalysis of both weighted and unweighted networks. We study neural networks and man-made communication and transportation systems and we show that the underlying general principle of their construction is in fact a small-world principle of high efficiency.
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              Functional cartography of complex metabolic networks

              , (2005)
              High-throughput techniques are leading to an explosive growth in the size of biological databases and creating the opportunity to revolutionize our understanding of life and disease. Interpretation of these data remains, however, a major scientific challenge. Here, we propose a methodology that enables us to extract and display information contained in complex networks. Specifically, we demonstrate that one can (i) find functional modules in complex networks, and (ii) classify nodes into universal roles according to their pattern of intra- and inter-module connections. The method thus yields a ``cartographic representation'' of complex networks. Metabolic networks are among the most challenging biological networks and, arguably, the ones with more potential for immediate applicability. We use our method to analyze the metabolic networks of twelve organisms from three different super-kingdoms. We find that, typically, 80% of the nodes are only connected to other nodes within their respective modules, and that nodes with different roles are affected by different evolutionary constraints and pressures. Remarkably, we find that low-degree metabolites that connect different modules are more conserved than hubs whose links are mostly within a single module.
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                Author and article information

                Journal
                eNeuro
                eNeuro
                eneuro
                eneuro
                eNeuro
                eNeuro
                Society for Neuroscience
                2373-2822
                28 May 2018
                4 June 2018
                May-Jun 2018
                : 5
                : 3
                : ENEURO.0083-18.2018
                Affiliations
                [1 ]Department of Data Analysis, Faculty of Psychology and Educational Sciences, Ghent University , Ghent, 9000, Belgium
                [2 ]Charité – Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin , Berlin, Germany
                [3 ]Department of Neurology, Berlin Institute of Health , 10117, Berlin, Germany
                [4 ] Bernstein Focus State Dependencies of Learning and Bernstein Center for Computational Neuroscience , Berlin, 10117, Germany
                [5 ]Imec – Vision Lab, Department of Physics, University of Antwerp , Antwerp, 2610, Belgium
                [6 ]Department of Neurosurgery, Ghent University Hospital , Ghent, 9000, Belgium
                [7 ]Department of Neuroradiology, Ghent University Hospital , Ghent, 9000, Belgium
                Author notes

                The authors declare no competing financial interests.

                Author contributions: DM and HA designed research; HA, DVR, and EA acquired data; HA, MS, and BJ analyzed data; HA, MS, and DM wrote the paper; PR provided analytic tools.

                This project was supported by the Special Research Funds (BOF) of the University of Ghent (01MR0210 and 01J10715), as well as Grant P7/11 from the Interuniversity Attraction Poles Program of the Belgian Federal Government.

                Correspondence should be addressed to Daniele Marinazzo, Faculty of Psychology and Educational Sciences, Department of Data Analysis, Henri Dunantlaan 2, 9000 Gent, Belgium. E-mail: daniele.marinazzo@ 123456ugent.be .
                Author information
                http://orcid.org/0000-0001-8227-8476
                http://orcid.org/0000-0002-5148-4178
                http://orcid.org/0000-0002-9803-0122
                Article
                eN-NWR-0083-18
                10.1523/ENEURO.0083-18.2018
                6001263
                29911173
                a441be2f-3b52-4601-91e6-7f03e799529a
                Copyright © 2018 Aerts et al.

                This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license, which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.

                History
                : 26 February 2018
                : 4 May 2018
                : 8 May 2018
                Page count
                Figures: 6, Tables: 1, Equations: 0, References: 65, Pages: 15, Words: 10519
                Funding
                Funded by: Ghent University
                Award ID: 01MR0210
                Award ID: 01J10715
                Funded by: Belgian Science Policy
                Award ID: P7-CEREBNET
                Categories
                7
                7.1
                New Research
                Novel Tools and Methods
                Custom metadata
                May/June 2018

                brain tumor,computational neuroscience,connectome,functional connectivity,graph theory,neuroinformatics

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