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      MatInspector and beyond: promoter analysis based on transcription factor binding sites.

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          Abstract

          Promoter analysis is an essential step on the way to identify regulatory networks. A prerequisite for successful promoter analysis is the prediction of potential transcription factor binding sites (TFBS) with reasonable accuracy. The next steps in promoter analysis can be tackled only with reliable predictions, e.g. finding phylogenetically conserved patterns or identifying higher order combinations of sites in promoters of co-regulated genes.

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          Author and article information

          Journal
          Bioinformatics
          Bioinformatics (Oxford, England)
          Oxford University Press (OUP)
          1367-4803
          1367-4803
          Jul 01 2005
          : 21
          : 13
          Affiliations
          [1 ] Genomatix Software GmbH Landsberger Strasse. 6, 80339 München, Germany. cartharius@genomatix.de
          Article
          bti473
          10.1093/bioinformatics/bti473
          15860560
          a5036660-6bd9-44c5-956d-42b06160c988
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