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      SARS-CoV-2 promotes microglial synapse elimination in human brain organoids

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          Abstract

          Neuropsychiatric manifestations are common in both the acute and post-acute phase of SARS-CoV-2 infection, but the mechanisms of these effects are unknown. In a newly established brain organoid model with innately developing microglia, we demonstrate that SARS-CoV-2 infection initiate neuronal cell death and cause a loss of post-synaptic termini. Despite limited neurotropism and a decelerating viral replication, we observe a threefold increase in microglial engulfment of postsynaptic termini after SARS-CoV-2 exposure. We define the microglial responses to SARS-CoV-2 infection by single cell transcriptomic profiling and observe an upregulation of interferon-responsive genes as well as genes promoting migration and synapse engulfment. To a large extent, SARS-CoV-2 exposed microglia adopt a transcriptomic profile overlapping with neurodegenerative disorders that display an early synapse loss as well as an increased incident risk after a SARS-CoV-2 infection. Our results reveal that brain organoids infected with SARS-CoV-2 display disruption in circuit integrity via microglia-mediated synapse elimination and identifies a potential novel mechanism contributing to cognitive impairments in patients recovering from COVID-19.

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          Most cited references53

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          Neurotoxic reactive astrocytes are induced by activated microglia

          A reactive astrocyte subtype termed A1 is induced after injury or disease of the central nervous system and subsequently promotes the death of neurons and oligodendrocytes.
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            A Unique Microglia Type Associated with Restricting Development of Alzheimer's Disease.

            Alzheimer's disease (AD) is a detrimental neurodegenerative disease with no effective treatments. Due to cellular heterogeneity, defining the roles of immune cell subsets in AD onset and progression has been challenging. Using transcriptional single-cell sorting, we comprehensively map all immune populations in wild-type and AD-transgenic (Tg-AD) mouse brains. We describe a novel microglia type associated with neurodegenerative diseases (DAM) and identify markers, spatial localization, and pathways associated with these cells. Immunohistochemical staining of mice and human brain slices shows DAM with intracellular/phagocytic Aβ particles. Single-cell analysis of DAM in Tg-AD and triggering receptor expressed on myeloid cells 2 (Trem2)(-/-) Tg-AD reveals that the DAM program is activated in a two-step process. Activation is initiated in a Trem2-independent manner that involves downregulation of microglia checkpoints, followed by activation of a Trem2-dependent program. This unique microglia-type has the potential to restrict neurodegeneration, which may have important implications for future treatment of AD and other neurodegenerative diseases. VIDEO ABSTRACT.
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              Fate mapping analysis reveals that adult microglia derive from primitive macrophages.

              Microglia are the resident macrophages of the central nervous system and are associated with the pathogenesis of many neurodegenerative and brain inflammatory diseases; however, the origin of adult microglia remains controversial. We show that postnatal hematopoietic progenitors do not significantly contribute to microglia homeostasis in the adult brain. In contrast to many macrophage populations, we show that microglia develop in mice that lack colony stimulating factor-1 (CSF-1) but are absent in CSF-1 receptor-deficient mice. In vivo lineage tracing studies established that adult microglia derive from primitive myeloid progenitors that arise before embryonic day 8. These results identify microglia as an ontogenically distinct population in the mononuclear phagocyte system and have implications for the use of embryonically derived microglial progenitors for the treatment of various brain disorders.

                Author and article information

                Contributors
                carl.sellgren@ki.se
                Journal
                Mol Psychiatry
                Mol Psychiatry
                Molecular Psychiatry
                Nature Publishing Group UK (London )
                1359-4184
                1476-5578
                5 October 2022
                5 October 2022
                : 1-12
                Affiliations
                [1 ]GRID grid.4714.6, ISNI 0000 0004 1937 0626, Department of Physiology and Pharmacology, , Karolinska Institute, ; Stockholm, Sweden
                [2 ]GRID grid.4714.6, ISNI 0000 0004 1937 0626, Department of Microbiology, Tumor and Cell Biology, , Karolinska Institute, ; Stockholm, Sweden
                [3 ]GRID grid.24381.3c, ISNI 0000 0000 9241 5705, Department of Molecular Medicine and Surgery, Karolinska Institutet and Center for Molecular Medicine, , Karolinska University Hospital, ; Stockholm, Sweden
                [4 ]GRID grid.32224.35, ISNI 0000 0004 0386 9924, Center for Genomic Medicine and Department of Psychiatry, , Massachusetts General Hospital, ; Boston, MA USA
                [5 ]GRID grid.24381.3c, ISNI 0000 0000 9241 5705, Centre for Psychiatry Research, Department of Clinical Neuroscience, Karolinska Institutet & Stockholm Health Care Services, Stockholm County Council, , Karolinska University Hospital, ; Stockholm, Sweden
                Author information
                http://orcid.org/0000-0001-5011-2922
                http://orcid.org/0000-0003-1045-1158
                http://orcid.org/0000-0001-6001-7240
                http://orcid.org/0000-0001-9103-2785
                Article
                1786
                10.1038/s41380-022-01786-2
                9533278
                36198765
                a50d287e-bc59-462c-af6b-7d20a6969c13
                © The Author(s) 2022

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 4 March 2022
                : 2 September 2022
                : 8 September 2022
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100001862, Svenska Forskningsrådet Formas (Swedish Research Council Formas);
                Award ID: 2017-02559
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100004047, Karolinska Institutet (Karolinska Institute);
                Award ID: KID
                Award Recipient :
                Categories
                Immediate Communication

                Molecular medicine
                neuroscience,cell biology
                Molecular medicine
                neuroscience, cell biology

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