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      Species Concepts and Species Delimitation

      1
      Systematic Biology
      Informa UK Limited

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          Abstract

          The issue of species delimitation has long been confused with that of species conceptualization, leading to a half century of controversy concerning both the definition of the species category and methods for inferring the boundaries and numbers of species. Alternative species concepts agree in treating existence as a separately evolving metapopulation lineage as the primary defining property of the species category, but they disagree in adopting different properties acquired by lineages during the course of divergence (e.g., intrinsic reproductive isolation, diagnosability, monophyly) as secondary defining properties (secondary species criteria). A unified species concept can be achieved by treating existence as a separately evolving metapopulation lineage as the only necessary property of species and the former secondary species criteria as different lines of evidence (operational criteria) relevant to assessing lineage separation. This unified concept of species has several consequences for species delimitation, including the following: First, the issues of species conceptualization and species delimitation are clearly separated; the former secondary species criteria are no longer considered relevant to species conceptualization but only to species delimitation. Second, all of the properties formerly treated as secondary species criteria are relevant to species delimitation to the extent that they provide evidence of lineage separation. Third, the presence of any one of the properties (if appropriately interpreted) is evidence for the existence of a species, though more properties and thus more lines of evidence are associated with a higher degree of corroboration. Fourth, and perhaps most significantly, a unified species concept shifts emphasis away from the traditional species criteria, encouraging biologists to develop new methods of species delimitation that are not tied to those properties.

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          Most cited references33

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          The Evolutionary Species Concept Reconsidered

          E. Wiley (1978)
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            Delimiting species without monophyletic gene trees.

            Genetic data are frequently used to delimit species, where species status is determined on the basis of an exclusivity criterium, such as reciprocal monophyly. Not only are there numerous empirical examples of incongruence between the boundaries inferred from such data compared to other sources like morphology -- especially with recently derived species, but population genetic theory also clearly shows that an inevitable bias in species status results because genetic thresholds do not explicitly take into account how the timing of speciation influences patterns of genetic differentiation. This study represents a fundamental shift in how genetic data might be used to delimit species. Rather than equating gene trees with a species tree or basing species status on some genetic threshold, the relationship between the gene trees and the species history is modeled probabilistically. Here we show that the same theory that is used to calculate the probability of reciprocal monophyly can also be used to delimit species despite widespread incomplete lineage sorting. The results from a preliminary simulation study suggest that very recently derived species can be accurately identified long before the requisite time for reciprocal monophyly to be achieved following speciation. The study also indicates the importance of sampling, both with regards to loci and individuals. Withstanding a thorough investigation into the conditions under which the coalescent-based approach will be effective, namely how the timing of divergence relative to the effective population size of species affects accurate species delimitation, the results are nevertheless consistent with other recent studies (aimed at inferring species relationships), showing that despite the lack of monophyletic gene trees, a signal of species divergence persists and can be extracted. Using an explicit model-based approach also avoids two primary problems with species delimitation that result when genetic thresholds are applied with genetic data -- the inherent biases in species detection arising from when and how speciation occurred, and failure to take into account the high stochastic variance of genetic processes. Both the utility and sensitivities of the coalescent-based approach outlined here are discussed; most notably, a model-based approach is essential for determining whether incompletely sorted gene lineages are (or are not) consistent with separate species lineages, and such inferences require accurate model parameterization (i.e., a range of realistic effective population sizes relative to potential times of divergence for the purported species). It is the goal (and motivation of this study) that genetic data might be used effectively as a source of complementation to other sources of data for diagnosing species, as opposed to the exclusion of other evidence for species delimitation, which will require an explicit consideration of the effects of the temporal dynamic of lineage splitting on genetic data.
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              A species definition for the modern synthesis.

              One hundred and thirty-six years since On the Origin of Species 3., biologists might be expected to have an accepted theory of speciation. Instead, there is, if anything, more disagreement about speciation than ever before. Even more surprisingly, 60 years after the biological species concept, in which species were considered to be reproductive communities isolated from other such communities, we still do not all accept a common definition of what a species is. And yet, if speciation is to be any different from ordinary evolution, we must have a clear definition of species. The emerging solution to the species problem is an updated, genetic version of Darwin's own definition. This definition is useful and is already being used in taxonomy, in biodiversity studies and in evolution.
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                Author and article information

                Journal
                Systematic Biology
                Informa UK Limited
                1076-836X
                1063-5157
                December 2007
                December 01 2007
                December 2007
                December 2007
                December 01 2007
                December 2007
                : 56
                : 6
                : 879-886
                Affiliations
                [1 ]Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution Washington, DC, 20560-0162, USA E-mail: dequeirozk@si.edu
                Article
                10.1080/10635150701701083
                18027281
                a6dc7b61-f783-4e6b-b479-eca770699c26
                © 2007
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