74
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Locus-Specific Mutation Databases for Neurodegenerative Brain Diseases

      research-article

      Read this article at

      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          The Alzheimer disease and frontotemporal dementia (AD&FTLD) and Parkinson disease (PD) Mutation Databases make available curated information of sequence variations in genes causing Mendelian forms of the most common neurodegenerative brain disease AD, frontotemporal lobar degeneration (FTLD), and PD. They are established resources for clinical geneticists, neurologists, and researchers in need of comprehensive, referenced genetic, epidemiologic, clinical, neuropathological, and/or cell biological information of specific gene mutations in these diseases. In addition, the aggregate analysis of all information available in the databases provides unique opportunities to extract mutation characteristics and genotype–phenotype correlations, which would be otherwise unnoticed and unexplored. Such analyses revealed that 61.4% of mutations are private to one single family, while only 5.7% of mutations occur in 10 or more families. The five mutations with most frequent independent observations occur in 21% of AD, 43% of FTLD, and 48% of PD families recorded in the Mutation Databases, respectively. Although these figures are inevitably biased by a publishing policy favoring novel mutations, they probably also reflect the occurrence of multiple rare and few relatively common mutations in the inherited forms of these diseases. Finally, with the exception of the PD genes PARK2 and PINK1, all other genes are associated with more than one clinical diagnosis or characteristics thereof. Hum Mutat 33:1340–1344, 2012. © 2012 Wiley Periodicals, Inc.

          Related collections

          Most cited references23

          • Record: found
          • Abstract: found
          • Article: not found

          Systematic meta-analyses of Alzheimer disease genetic association studies: the AlzGene database.

          The past decade has witnessed hundreds of reports declaring or refuting genetic association with putative Alzheimer disease susceptibility genes. This wealth of information has become increasingly difficult to follow, much less interpret. We have created a publicly available, continuously updated database that comprehensively catalogs all genetic association studies in the field of Alzheimer disease (http://www.alzgene.org). We performed systematic meta-analyses for each polymorphism with available genotype data in at least three case-control samples. In addition to identifying the epsilon4 allele of APOE and related effects, we pinpointed over a dozen potential Alzheimer disease susceptibility genes (ACE, CHRNB2, CST3, ESR1, GAPDHS, IDE, MTHFR, NCSTN, PRNP, PSEN1, TF, TFAM and TNF) with statistically significant allelic summary odds ratios (ranging from 1.11-1.38 for risk alleles and 0.92-0.67 for protective alleles). Our database provides a powerful tool for deciphering the genetics of Alzheimer disease, and it serves as a potential model for tracking the most viable gene candidates in other genetically complex diseases.
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion.

            Consistent gene mutation nomenclature is essential for efficient and accurate reporting, testing, and curation of the growing number of disease mutations and useful polymorphisms being discovered in the human genome. While a codified mutation nomenclature system for simple DNA lesions has now been adopted broadly by the medical genetics community, it is inherently difficult to represent complex mutations in a unified manner. In this article, suggestions are presented for reporting just such complex mutations. Copyright 2000 Wiley-Liss, Inc.
              Bookmark
              • Record: found
              • Abstract: found
              • Article: found
              Is Open Access

              NCBI Reference Sequences: current status, policy and new initiatives

              NCBI's Reference Sequence (RefSeq) database (http://www.ncbi.nlm.nih.gov/RefSeq/) is a curated non-redundant collection of sequences representing genomes, transcripts and proteins. RefSeq records integrate information from multiple sources and represent a current description of the sequence, the gene and sequence features. The database includes over 5300 organisms spanning prokaryotes, eukaryotes and viruses, with records for more than 5.5 × 106 proteins (RefSeq release 30). Feature annotation is applied by a combination of curation, collaboration, propagation from other sources and computation. We report here on the recent growth of the database, recent changes to feature annotations and record types for eukaryotic (primarily vertebrate) species and policies regarding species inclusion and genome annotation. In addition, we introduce RefSeqGene, a new initiative to support reporting variation data on a stable genomic coordinate system.
                Bookmark

                Author and article information

                Journal
                Hum Mutat
                Hum. Mutat
                humu
                Human Mutation
                Wiley Subscription Services, Inc., A Wiley Company (Hoboken )
                1059-7794
                1098-1004
                September 2012
                11 May 2012
                : 33
                : 9
                : 1340-1344
                Affiliations
                [1 ]Neurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB Antwerpen, Belgium
                [2 ]Laboratory of Neurogenetics, Institute Born-Bunge, University of Antwerp Antwerpen, Belgium
                Author notes
                *Correspondence to: Marc Cruts, Neurodegenerative Brain Diseases Group, VIB Department of Molecular Genetics, University of Antwerp - CDE, Universiteitsplein 1, B-2610, Antwerp, Belgium; E-mail: marc.cruts@ 123456molgen.vib-ua.be

                For the Databases in Neurogenetics Special Issue

                Contract grant sponsor: Interuniversity Attraction Poles Programme IAP P6/43 of the Belgian Science Policy Office; Methusalem program of the Flemish Government; Foundation for Alzheimer Research (SAO/FRMA); Queen Elisabeth Medical Foundation (QEMF); Research Foundation—Flanders (FWO); Agency for Innovation by Science and Technology—Flanders (IWT); Special Research Fund of the University of Antwerp, Belgium.

                Article
                10.1002/humu.22117
                3465795
                22581678
                a75f1903-690d-4f30-be3c-f3e24d3f6631
                © 2012 Wiley Periodicals, Inc.

                Re-use of this article is permitted in accordance with the Creative Commons Deed, Attribution 2.5, which does not permit commercial exploitation.

                History
                : 13 February 2012
                : 26 April 2012
                Categories
                Databases

                Human biology
                locus-specific,frontotemporal lobar degeneration,neurodegenerative brain disease,parkinson disease,alzheimer disease,mutation database

                Comments

                Comment on this article