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      A phylogenetically-based nomenclature for Cordycipitaceae ( Hypocreales)

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          Abstract

          The ending of dual nomenclatural systems for pleomorphic fungi in 2011 requires the reconciliation of competing names, ideally linked through culture based or molecular methods. The phylogenetic systematics of Hypocreales and its many genera have received extensive study in the last two decades, however resolution of competing names in Cordycipitaceae has not yet been addressed. Here we present a molecular phylogenetic investigation of Cordycipitaceae that enables identification of competing names in this family, and provides the basis upon which these names can be maintained or suppressed. The taxonomy presented here seeks to harmonize competing names by principles of priority, recognition of monophyletic groups, and the practical usage of affected taxa. In total, we propose maintaining nine generic names, Akanthomyces, Ascopolyporus, Beauveria, Cordyceps, Engyodontium, Gibellula, Hyperdermium, Parengyodontium, and Simplicillium and the rejection of eight generic names, Evlachovaea, Granulomanus, Isaria, Lecanicillium, Microhilum, Phytocordyceps, Synsterigmatocystis, and Torrubiella. Two new generic names, Hevansia and Blackwellomyces, and a new species, Beauveria blattidicola, are described. New combinations are also proposed in the genera Akanthomyces, Beauveria, Blackwellomyces, and Hevansia.

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          Phylogenetic classification of Cordyceps and the clavicipitaceous fungi

          Cordyceps, comprising over 400 species, was historically classified in the Clavicipitaceae, based on cylindrical asci, thickened ascus apices and filiform ascospores, which often disarticulate into part-spores. Cordyceps was characterized by the production of well-developed often stipitate stromata and an ecology as a pathogen of arthropods and Elaphomyces with infrageneric classifications emphasizing arrangement of perithecia, ascospore morphology and host affiliation. To refine the classification of Cordyceps and the Clavicipitaceae, the phylogenetic relationships of 162 taxa were estimated based on analyses consisting of five to seven loci, including the nuclear ribosomal small and large subunits (nrSSU and nrLSU), the elongation factor 1α (tef1), the largest and the second largest subunits of RNA polymerase II (rpb1 and rpb2), β-tubulin (tub), and mitochondrial ATP6 (atp6). Our results strongly support the existence of three clavicipitaceous clades and reject the monophyly of both Cordyceps and Clavicipitaceae. Most diagnostic characters used in current classifications of Cordyceps (e.g., arrangement of perithecia, ascospore fragmentation, etc.) were not supported as being phylogenetically informative; the characters that were most consistent with the phylogeny were texture, pigmentation and morphology of stromata. Therefore, we revise the taxonomy of Cordyceps and the Clavicipitaceae to be consistent with the multi-gene phylogeny. The family Cordycipitaceae is validated based on the type of Cordyceps, C. militaris, and includes most Cordyceps species that possess brightly coloured, fleshy stromata. The new family Ophiocordycipitaceae is proposed based on Ophiocordyceps Petch, which we emend. The majority of species in this family produce darkly pigmented, tough to pliant stromata that often possess aperithecial apices. The new genus Elaphocordyceps is proposed for a subclade of the Ophiocordycipitaceae, which includes all species of Cordyceps that parasitize the fungal genus Elaphomyces and some closely related species that parasitize arthropods. The family Clavicipitaceae s. s. is emended and includes the core clade of grass symbionts (e.g., Balansia, Claviceps, Epichloë, etc.), and the entomopathogenic genus Hypocrella and relatives. In addition, the new genus Metacordyceps is proposed for Cordyceps species that are closely related to the grass symbionts in the Clavicipitaceae s. s. Metacordyceps includes teleomorphs linked to Metarhizium and other closely related anamorphs. Two new species are described, and lists of accepted names for species in Cordyceps, Elaphocordyceps, Metacordyceps and Ophiocordyceps are provided.
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            Fungal entomopathogens: new insights on their ecology

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              Purpureocillium, a new genus for the medically important Paecilomyces lilacinus.

              Paecilomyces lilacinus was described more than a century ago and is a commonly occurring fungus in soil. However, in the last decade this fungus has been increasingly found as the causal agent of infections in man and other vertebrates. Most cases of disease are described from patients with compromised immune systems or intraocular lens implants. In this study, we compared clinical isolates with strains isolated from soil, insects and nematodes using 18S rRNA gene, internal transcribed spacer (ITS) and partial translation elongation factor 1-α (TEF) sequences. Our data show that P. lilacinus is not related to Paecilomyces, represented by the well-known thermophilic and often pathogenic Paecilomyces variotii. The new genus name Purpureocillium is proposed for P. lilacinus and the new combination Purpureocillium lilacinum is made here. Furthermore, the examined Purpureocillium lilacinum isolated grouped in two clades based on ITS and partial TEF sequences. The ITS and TEF sequences of the Purpureocillium lilacinum isolates used for biocontrol of nematode pests are identical to those causing infections in (immunocompromised) humans. The use of high concentrations of Purpureocillium lilacinum spores for biocontrol poses a health risk in immunocompromised humans and more research is needed to determine the pathogenicity factors of Purpureocillium lilacinum. 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.
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                Author and article information

                Journal
                IMA Fungus
                IMA Fungus
                IMA Fungus
                IMA Fungus
                International Mycological Association
                2210-6340
                2210-6359
                21 November 2017
                December 2017
                : 8
                : 2
                : 335-353
                Affiliations
                [1 ]USDA-ARS, Sustainable Agriculture Systems Laboratory, Beltsville, MD 20705, USA;
                [2 ]Microbe Interaction and Ecology Laboratory, BIOTEC, National Science and Technology Development Agency, 113 Thailand Science Park, Phahonyothin Rd, Klong Neung, Klong Luang, Pathum Thani, 12120 Thailand
                [3 ]Zhejiang BioAsia Institute of Life Sciences, 1938 Xinqun Road, Economic and Technological Development Zone, Pinghu, Zhejiang, 314200 China
                [4 ]Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48104, USA
                [5 ]Institute for Bio-Medical Convergence, International St Mary's Hospital and College of Medicine, Catholic Kwandong University, Incheon 22711, Korea
                [6 ]USDA-ARS, Mycology and Nematology Genetic Diversity and Biology Laboratory, Beltsville, MD 20705, USA
                [7 ]Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA
                [8 ]Department of Biological Sciences, Humboldt State University, Arcata, CA, 95521, USA
                [9 ]Laboratorio de Taxonomía y Ecología de Hongos, Universidad de Antioquia, calle 67 No. 53 – 108, A.A. 1226, Medellin, Colombia
                [10 ]Iranian Research Institute of Plant Protection, Agricultural Research, Education and Extension Organization (AREEO), Tehran, Iran
                [11 ]Anhui Provincial Key Laboratory of Microbial Control, Anhui Agricultural University, Hefei 230036, Peoples’ Republic of China
                [12 ]Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA
                [13 ]Mushtech Cordyceps Institute, Cheongil-ro 453 Beon-gil 55-9, Cheongil-myeon, Hoengseong-gun, Gangwon Province 25255, Korea
                Author notes
                corresponding author e-mail: ryan.kepler@ 123456ars.usda.gov
                Article
                10.5598/imafungus.2017.08.02.08
                5729716
                29242779
                a7835098-9987-4e20-a2cb-d264e39c83d8
                © 2017 International Mycological Association

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                History
                : 21 April 2017
                : 30 October 2017
                Categories
                Article

                Plant science & Botany
                akanthomyces,ascopolyporus,beauveria,blackwellomyces,cordyceps,dual nomenclature,engyodontium,gibellula,hevansia,hyperdermium,parengyodontium,simplicillium

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