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      Molecular structure and target recognition of neuronal calcium sensor proteins

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          Abstract

          Neuronal calcium sensor (NCS) proteins, a sub-branch of the EF-hand superfamily, are expressed in the brain and retina where they transduce calcium signals and are genetically linked to degenerative diseases. The amino acid sequences of NCS proteins are highly conserved but their physiological functions are quite distinct. Retinal recoverin and guanylate cyclase activating proteins (GCAPs) both serve as calcium sensors in retinal rod cells, neuronal frequenin (NCS1) modulates synaptic activity and neuronal secretion, K + channel interacting proteins (KChIPs) regulate ion channels to control neuronal excitability, and DREAM (KChIP3) is a transcriptional repressor that regulates neuronal gene expression. Here we review the molecular structures of myristoylated forms of NCS1, recoverin, and GCAP1 that all look very different, suggesting that the sequestered myristoyl group helps to refold these highly homologous proteins into very different structures. The molecular structure of NCS target complexes have been solved for recoverin bound to rhodopsin kinase (RK), NCS-1 bound to phosphatidylinositol 4-kinase, and KChIP1 bound to A-type K + channels. We propose that N-terminal myristoylation is critical for shaping each NCS family member into a different structure, which upon Ca 2+-induced extrusion of the myristoyl group exposes a unique set of previously masked residues that interact with a particular physiological target.

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          Most cited references100

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          Modulation of A-type potassium channels by a family of calcium sensors.

          In the brain and heart, rapidly inactivating (A-type) voltage-gated potassium (Kv) currents operate at subthreshold membrane potentials to control the excitability of neurons and cardiac myocytes. Although pore-forming alpha-subunits of the Kv4, or Shal-related, channel family form A-type currents in heterologous cells, these differ significantly from native A-type currents. Here we describe three Kv channel-interacting proteins (KChIPs) that bind to the cytoplasmic amino termini of Kv4 alpha-subunits. We find that expression of KChIP and Kv4 together reconstitutes several features of native A-type currents by modulating the density, inactivation kinetics and rate of recovery from inactivation of Kv4 channels in heterologous cells. All three KChIPs co-localize and co-immunoprecipitate with brain Kv4 alpha-subunits, and are thus integral components of native Kv4 channel complexes. The KChIPs have four EF-hand-like domains and bind calcium ions. As the activity and density of neuronal A-type currents tightly control responses to excitatory synaptic inputs, these KChIPs may regulate A-type currents, and hence neuronal excitability, in response to changes in intracellular calcium.
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            Calmodulin in action: diversity in target recognition and activation mechanisms.

            Recent structural studies on calmodulin complexes with anthrax adenylyl cyclase and rat Ca2+-activated K+ channel have uncovered unexpected ways by which calmodulin interacts with target proteins.
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              Structure of calmodulin refined at 2.2 A resolution.

              The crystal structure of mammalian calmodulin has been refined at 2.2 A (1 A = 0.1 nm) resolution using a restrained least-squares method. The final crystallographic R-factor, based on 6685 reflections in the range 2.2 A less than or equal to d less than or equal to 5.0 A with intensities exceeding 2.5 sigma, is 0.175. Bond lengths and bond angles in the molecule have root-mean-square deviations from ideal values of 0.016 A and 1.7 degrees, respectively. The refined model includes residues 5 to 147, four Ca2+ and 69 water molecules per molecule of calmodulin. The electron density for residues 1 to 4 and 148 is poorly defined, and they are not included in the model. The molecule is shaped somewhat like a dumbbell, with an overall length of 65 A; the two lobes are connected by a seven-turn alpha-helix. Prominent secondary structural features include seven alpha-helices, four Ca2+-binding loops, and two short, double-stranded antiparallel beta-sheets between pairs of adjacent Ca2+-binding loops. The four Ca2+-binding domains in calmodulin have a typical EF hand conformation (helix-loop-helix) and are similar to those described in other Ca2+-binding proteins. The X-ray structure determination of calmodulin shows a large hydrophobic cleft in each half of the molecule. These hydrophobic regions probably represent the sites of interaction with many of the pharmacological agents known to bind to calmodulin.
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                Author and article information

                Journal
                Front Mol Neurosci
                Front. Mol. Neurosci.
                Frontiers in Molecular Neuroscience
                Frontiers Media S.A.
                1662-5099
                19 January 2012
                09 February 2012
                2012
                : 5
                : 10
                Affiliations
                [1] 1simpleDepartment of Chemistry, University of California, Davis CA, USA
                [2] 2simpleOntario Cancer Institute and Department of Medical Biophysics, University of Toronto, Toronto ON, Canada
                Author notes

                Edited by: Jose R. Naranjo, Centro Nacional de Biotecnología, Spain

                Reviewed by: Jose R. Naranjo, Centro Nacional de Biotecnología, Spain; Robert Kretsinger, University of Virginia, USA

                *Correspondence: James B. Ames, Department of Chemistry, University of California, One Shields Avenue, Davis, CA 95616, USA. e-mail: ames@ 123456chem.ucdavis.edu
                Article
                10.3389/fnmol.2012.00010
                3275791
                22363261
                a79a6859-fe70-448c-9aaf-c6b0118349fe
                Copyright © 2012 Ames, Lim and Ikura.

                This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.

                History
                : 05 January 2012
                : 26 January 2012
                Page count
                Figures: 8, Tables: 1, Equations: 0, References: 107, Pages: 12, Words: 9607
                Categories
                Neuroscience
                Review Article

                Neurosciences
                ef-hand,ncs-1,recoverin,calcium,ncs proteins,ca2+-myristoyl switch,gcap1,nmr
                Neurosciences
                ef-hand, ncs-1, recoverin, calcium, ncs proteins, ca2+-myristoyl switch, gcap1, nmr

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