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      Fourier Transform Infrared Spectroscopy vibrational bands study of Spinacia oleracea and Trigonella corniculata under biochar amendment in naturally contaminated soil

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          Abstract

          Fourier transform infrared spectroscopy (FTIR) spectroscopy detects functional groups such as vibrational bands like N-H, O-H, C-H, C = O (ester, amine, ketone, aldehyde), C = C, C = N (vibrational modes of a tetrapyrrole ring) and simply C = N. The FTIR of these bands is fundamental to the investigation of the effect of biochar (BC) treatment on structural changes in the chlorophyll molecules of both plants that were tested. For this, dried leaf of Spinacia oleracia (spinach) and Trigonella corniculata (fenugreek) were selected for FTIR spectral study of chlorophyll associated functional groups. The study’s primary goal was to investigate the silent features of infrared (IR) spectra of dried leave samples. The data obtained from the current study also shows that leaf chlorophyll can mask or suppress other molecules’ FITR bands, including proteins. In addition, the C = O bands with Mg and the C9 ketonic group of chlorophyll are observed as peaks at1600 (0%BC), 1650 (3%BC) and 1640, or near to1700 (5%BC) in spinach samples. In fenugreek, additional effects are observed in the FTIR spectra of chlorophyll at the major groups of C = C, C = O and C9 of the ketonic groups, and the vibrational bands are more evident at C-H and N-H of the tetrapyrrole ring. It is concluded that C-N bands are more visible in 5% BC treated spinach and fenugreek than in all other treatments. These types of spectra are useful in detecting changes or visibility of functional groups, which are very helpful in supporting biochemical data such as an increase in protein can be detected by more visibility of C-N bands in FTIR spectra.

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          Phytoremediation of heavy metals--concepts and applications.

          The mobilization of heavy metals by man through extraction from ores and processing for different applications has led to the release of these elements into the environment. Since heavy metals are nonbiodegradable, they accumulate in the environment and subsequently contaminate the food chain. This contamination poses a risk to environmental and human health. Some heavy metals are carcinogenic, mutagenic, teratogenic and endocrine disruptors while others cause neurological and behavioral changes especially in children. Thus remediation of heavy metal pollution deserves due attention. Different physical and chemical methods used for this purpose suffer from serious limitations like high cost, intensive labor, alteration of soil properties and disturbance of soil native microflora. In contrast, phytoremediation is a better solution to the problem. Phytoremediation is the use of plants and associated soil microbes to reduce the concentrations or toxic effects of contaminants in the environments. It is a relatively recent technology and is perceived as cost-effective, efficient, novel, eco-friendly, and solar-driven technology with good public acceptance. Phytoremediation is an area of active current research. New efficient metal hyperaccumulators are being explored for applications in phytoremediation and phytomining. Molecular tools are being used to better understand the mechanisms of metal uptake, translocation, sequestration and tolerance in plants. This review article comprehensively discusses the background, concepts and future trends in phytoremediation of heavy metals. Copyright © 2013 Elsevier Ltd. All rights reserved.
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            Relationships between leaf chlorophyll content and spectral reflectance and algorithms for non-destructive chlorophyll assessment in higher plant leaves.

            Leaf chlorophyll content provides valuable information about physiological status of plants. Reflectance measurement makes it possible to quickly and non-destructively assess, in situ, the chlorophyll content in leaves. Our objective was to investigate the spectral behavior of the relationship between reflectance and chlorophyll content and to develop a technique for non-destructive chlorophyll estimation in leaves with a wide range of pigment content and composition using reflectance in a few broad spectral bands. Spectral reflectance of maple, chestnut, wild vine and beech leaves in a wide range of pigment content and composition was investigated. It was shown that reciprocal reflectance (R lambda)-1 in the spectral range lambda from 520 to 550 nm and 695 to 705 nm related closely to the total chlorophyll content in leaves of all species. Subtraction of near infra-red reciprocal reflectance, (RNIR)-1, from (R lambda)-1 made index [(R lambda)(-1)-(RNIR)-1] linearly proportional to the total chlorophyll content in spectral ranges lambda from 525 to 555 nm and from 695 to 725 nm with coefficient of determination r2 > 0.94. To adjust for differences in leaf structure, the product of the latter index and NIR reflectance [(R lambda)(-1)-(RNIR)-1]*(RNIR) was used; this further increased the accuracy of the chlorophyll estimation in the range lambda from 520 to 585 nm and from 695 to 740 nm. Two independent data sets were used to validate the developed algorithms. The root mean square error of the chlorophyll prediction did not exceed 50 mumol/m2 in leaves with total chlorophyll ranged from 1 to 830 mumol/m2.
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              The Effects of Cadmium Toxicity

              Cadmium (Cd) is a toxic non-essential transition metal that poses a health risk for both humans and animals. It is naturally occurring in the environment as a pollutant that is derived from agricultural and industrial sources. Exposure to cadmium primarily occurs through the ingestion of contaminated food and water and, to a significant extent, through inhalation and cigarette smoking. Cadmium accumulates in plants and animals with a long half-life of about 25–30 years. Epidemiological data suggest that occupational and environmental cadmium exposure may be related to various types of cancer, including breast, lung, prostate, nasopharynx, pancreas, and kidney cancers. It has been also demonstrated that environmental cadmium may be a risk factor for osteoporosis. The liver and kidneys are extremely sensitive to cadmium’s toxic effects. This may be due to the ability of these tissues to synthesize metallothioneins (MT), which are Cd-inducible proteins that protect the cell by tightly binding the toxic cadmium ions. The oxidative stress induced by this xenobiotic may be one of the mechanisms responsible for several liver and kidney diseases. Mitochondria damage is highly plausible given that these organelles play a crucial role in the formation of ROS (reactive oxygen species) and are known to be among the key intracellular targets for cadmium. When mitochondria become dysfunctional after exposure to Cd, they produce less energy (ATP) and more ROS. Recent studies show that cadmium induces various epigenetic changes in mammalian cells, both in vivo and in vitro, causing pathogenic risks and the development of various types of cancers. The epigenetics present themselves as chemical modifications of DNA and histones that alter the chromatin without changing the sequence of the DNA nucleotide. DNA methyltransferase, histone acetyltransferase, histone deacetylase and histone methyltransferase, and micro RNA are involved in the epigenetic changes. Recently, investigations of the capability of sunflower (Helianthus annuus L.), Indian mustard (Brassica juncea), and river red gum (Eucalyptus camaldulensis) to remove cadmium from polluted soil and water have been carried out. Moreover, nanoparticles of TiO2 and Al2O3 have been used to efficiently remove cadmium from wastewater and soil. Finally, microbial fermentation has been studied as a promising method for removing cadmium from food. This review provides an update on the effects of Cd exposure on human health, focusing on the cellular and molecular alterations involved.
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                Author and article information

                Contributors
                Role: Data curationRole: Writing – original draft
                Role: ConceptualizationRole: Formal analysisRole: Methodology
                Role: Formal analysisRole: SoftwareRole: Writing – review & editing
                Role: InvestigationRole: Methodology
                Role: ConceptualizationRole: Formal analysis
                Role: SoftwareRole: ValidationRole: Writing – review & editing
                Role: MethodologyRole: ResourcesRole: Writing – review & editing
                Role: MethodologyRole: Visualization
                Role: ConceptualizationRole: MethodologyRole: Writing – review & editing
                Role: MethodologyRole: Writing – review & editing
                Role: Writing – review & editing
                Role: Writing – review & editing
                Role: Writing – review & editing
                Role: Writing – original draft
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                30 June 2021
                2021
                : 16
                : 6
                : e0253390
                Affiliations
                [1 ] Department of Botany, University of Central Punjab, Punjab, Pakistan
                [2 ] Pesticide Quality Control Laboratory, Multan, Punjab, Pakistan
                [3 ] Department of Soil Science, Faculty of Agricultural Sciences and Technology, Bahauddin Zakariya University, Multan, Pakistan
                [4 ] Department of Geology and Pedology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Brno, Czech Republic
                [5 ] Department of Agronomy, The University of Haripur, Haripur, Pakistan
                [6 ] Department of Agrochemistry, Soil Science, Microbiology and Plant Nutrition, Faculty of Agrisciences, Mendel University in Brno, Brno, Czech Republic
                [7 ] Faculty of Chemistry, Institute of Chemistry and Technology of Environmental Protection, Brno University of Technology, Brno, Czech Republic
                [8 ] Laboratory of Tropical and Mediterranean Symbioses, CIRAD, Mintpellier, France
                [9 ] Department of Biology, College of Science, Taif University, Taif, Saudi Arabia
                [10 ] Department of Agronomy, Faculty of Agriculture, Kafrelsheikh University, Kafr El-Shaikh, Egypt
                [11 ] Department of Biology, University of Waterloo, Waterloo, ON, Canada
                Harran Üniversitesi: Harran Universitesi, TURKEY
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0001-9001-2555
                https://orcid.org/0000-0003-4156-4673
                https://orcid.org/0000-0001-5237-722X
                Article
                PONE-D-21-02513
                10.1371/journal.pone.0253390
                8244852
                34191839
                a9d50d0b-2294-433e-8b51-222ad1c54e84
                © 2021 Younis et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 16 February 2021
                : 3 June 2021
                Page count
                Figures: 5, Tables: 1, Pages: 10
                Funding
                Funded by: TURSP -2020/295
                Award ID: TURSP -2020/295
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100010221, Higher Education Commision, Pakistan;
                Award ID: NRPU-8933
                Award Recipient :
                The research work is supported by the Higher Education Commission of Pakistan (NRPU-8933). We are also thankful to Taif University Researchers for Supporting with funds from Project number (TURSP -2020/295), Taif university, Taif, Saudi Arabia.
                Categories
                Research Article
                Biology and Life Sciences
                Cell Biology
                Cellular Structures and Organelles
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Cell Biology
                Plant Cell Biology
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Plant Science
                Plant Cell Biology
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Cell Biology
                Cellular Types
                Plant Cells
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Cell Biology
                Plant Cell Biology
                Plant Cells
                Chloroplasts
                Chlorophyll
                Biology and Life Sciences
                Plant Science
                Plant Cell Biology
                Plant Cells
                Chloroplasts
                Chlorophyll
                Physical Sciences
                Materials Science
                Materials
                Pigments
                Organic Pigments
                Chlorophyll
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Flowering Plants
                Spinach
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Vegetables
                Spinach
                Biology and Life Sciences
                Plant Science
                Plant Anatomy
                Leaves
                Physical Sciences
                Chemistry
                Chemical Compounds
                Organic Compounds
                Functional Groups
                Physical Sciences
                Chemistry
                Organic Chemistry
                Organic Compounds
                Functional Groups
                Research and Analysis Methods
                Spectrum Analysis Techniques
                Infrared Spectroscopy
                Fourier Transform Infrared Spectroscopy
                Physical Sciences
                Physics
                Classical Mechanics
                Vibration
                Physical Sciences
                Chemistry
                Chemical Compounds
                Acids
                Ketones
                Earth Sciences
                Soil Science
                Edaphology
                Custom metadata
                All relevant data are within the manuscript.

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