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      A neotype for Hyla x-signata Spix, 1824 (Amphibia, Anura, Hylidae)

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          Abstract

          Abstract The uncertain identity of Hyla x-signata Spix, 1824 has been a pervasive problem in the taxonomy of the genus Scinax. A species supposedly distributed from northeastern Brazil northwards to Colombia and Venezuela, described in a few lines without much information and with an accompanying figure, and its type specimen lost during World War II, combined to produce a curious situation. Twenty-one of the 39 species of the S. ruber Clade described in the last 50 years were considered to require a diagnosis from S. x-signatus by their authors. In most cases these had no other alternative than to gather information about this species from indirect sources, frequently pointing out the problems associated with its uncertain identity. In this paper, we review the taxonomic history of Hyla x-signata, designate a neotype, provide a redescription including advertisement call and sequence data, and diagnose it from all other species of the S. ruber Clade.

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          MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

          We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.
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            TNT version 1.5, including a full implementation of phylogenetic morphometrics

            Version 1.5 of the computer program TNT completely integrates landmark data into phylogenetic analysis. Landmark data consist of coordinates (in two or three dimensions) for the terminal taxa; TNT reconstructs shapes for the internal nodes such that the difference between ancestor and descendant shapes for all tree branches sums up to a minimum; this sum is used as tree score. Landmark data can be analysed alone or in combination with standard characters; all the applicable commands and options in TNT can be used transparently after reading a landmark data set. The program continues implementing all the types of analyses in former versions, including discrete and continuous characters (which can now be read at any scale, and automatically rescaled by TNT). Using algorithms described in this paper, searches for landmark data can be made tens to hundreds of times faster than it was possible before (from T to 3T times faster, where T is the number of taxa), thus making phylogenetic analysis of landmarks feasible even on standard personal computers.
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              TNT, a free program for phylogenetic analysis

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                Author and article information

                Journal
                paz
                Papéis Avulsos de Zoologia
                Pap. Avulsos Zool.
                Museu de Zoologia da Universidade de São Paulo (São Paulo, SP, Brazil )
                0031-1049
                1807-0205
                2020
                : 60
                : e20206056
                Affiliations
                [4] Buenos Aires Buenos Aires orgnameUniversidad de Buenos Aires orgdiv1Facultad de Ciencias Exactas y Naturales orgdiv2Departamento de Biodiversidad y Biología Experimental Argentina
                [2] Rio de Janeiro Rio de Janeiro orgnameUniversidade Federal do Rio de Janeiro orgdiv1Museu Nacional orgdiv2Departamento de Vertebrados Brazil
                [3] Ilhéus Bahia orgnameUniversidade Estadual de Santa Cruz orgdiv1Programa de Pós-Graduação em Zoologia Brazil
                [1] Buenos Aires orgnameMuseo Argentino de Ciencias Naturales “Bernardino Rivadavia” orgdiv1División Herpetología Argentina
                Article
                S0031-10492020000100254 S0031-1049(20)06000000254
                10.11606/1807-0205/2020.60.56
                aa0f0322-9d8c-47bf-979a-984a6a345bd1

                This work is licensed under a Creative Commons Attribution 4.0 International License.

                History
                : 01 November 2020
                : 07 October 2020
                Page count
                Figures: 0, Tables: 0, Equations: 0, References: 167, Pages: 0
                Product

                SciELO Brazil

                Self URI: Full text available only in PDF format (EN)
                Categories
                Articles

                Scinaxini,Scinax,Hylinae,Scinax ruber
                Scinaxini, Scinax, Hylinae, Scinax ruber

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